Fitness for 5 genes in Escherichia coli BW25113

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500 ntyidF and yidG overlap by 4 nucleotidesyidG and yidH overlap by 11 nucleotidesyidH and yidI are separated by 107 nucleotidesyidI and yidJ are separated by 46 nucleotides b3674: yidF - predicted DNA-binding transcriptional regulator (NCBI), at 3,853,137 to 3,853,634 yidF b3675: yidG - predicted inner membrane protein (NCBI), at 3,853,631 to 3,853,993 yidG b3676: yidH - conserved inner membrane protein (NCBI), at 3,853,983 to 3,854,330 yidH b3677: yidI - predicted inner membrane protein (NCBI), at 3,854,438 to 3,854,887 yidI b3678: yidJ - predicted sulfatase/phosphatase (NCBI), at 3,854,934 to 3,856,427 yidJ
Group Condition b3674 b3675 b3676 b3677 b3678
yidF yidG yidH yidI yidJ
carbon source acetate (C) -0.1 -3.5 -2.4 -0.9 -0.0
carbon source acetate (C) -0.0 -2.4 -3.6 -0.4 -0.1
carbon source succinate (C) -0.1 -2.2 -2.2 -0.0 -0.0
carbon source D-Ribose (C) +0.1 -1.8 -1.4 -0.5 -0.2
carbon source D-Ribose (C) +0.1 -2.2 -1.3 -0.3 -0.0
carbon source succinate (C) -0.1 -1.3 -1.6 -0.3 +0.0
carbon source Acetate (C) +0.1 -1.0 -1.3 -0.6 -0.1
carbon source L-Malic (C) +0.0 -1.4 -1.0 -0.4 -0.0
carbon source D-Glucosamine Hydrochloride (C) +0.1 -1.4 -1.2 -0.3 +0.0
carbon source L-Malic (C) +0.1 -0.9 -1.1 -0.5 -0.2
carbon source Glycolic Acid (C) -0.1 -1.5 -1.6 +0.6 +0.1
nitrogen source Putrescine (N) -0.3 -0.9 -0.5 -0.5 -0.2
carbon source D-Glucosamine Hydrochloride (C) +0.0 -1.4 -1.0 -0.0 +0.0
phage Ste41 +0.5 -1.0 -1.6 -0.0 -0.1
carbon source a-Ketoglutaric (C) -0.1 -0.8 -0.5 -0.5 -0.4
carbon source Acetate (C) +0.1 -1.0 -1.0 -0.1 -0.2
M9 Acetate 0.5% aerobic -0.1 -1.1 -1.5 +0.3 +0.4
carbon source Glycolic Acid (C) -0.1 -1.6 -0.9 +0.6 +0.2
protonated/deuterated protonated glucose in D2O +0.0 -0.9 -0.7 -0.3 +0.1
stress Aluminum chloride 5 mM +0.1 -0.8 +0.1 -0.8 -0.1
M9 Acetate 0.5% aerobic -0.1 -0.7 -0.9 +0.2 +0.2
phage Ste41 +0.1 -0.4 -1.0 +0.5 -0.3
motility outer cut, LB soft agar motility assay +0.2 +0.4 -0.6 -0.8 -0.2
control PBS_cage_1_mouse_1_Cecum_40 hr -0.0 -0.4 -0.6 +0.7 -0.4
phage T7_phage 0.00015625 MOI TC4 -0.4 +0.2 -0.7 +1.0 +0.3
motility inner cut, LB soft agar motility assay -0.5 +0.3 +0.8 +0.4 -0.4
stress Benzalkonium Chloride 0.004 mg/ml +0.4 +0.0 +0.9 -0.6 +0.1
carbon source Dodecanol and Rhamnolipid (C) +0.3 +0.1 +0.8 +0.6 +0.2
attachment_assay_attached_sample Time0_Wash=PBS; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB +0.3 +0.8 +0.6 +0.7 +0.2
stress Ciprofloxacin Hydrochloride 0.0003 mM +0.6 +0.1 +1.2 +0.7 +0.2
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