Fitness for 5 genes in Escherichia coli BW25113

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	b3641	b3642	b3643	b3644	b3645
		ttk	pyrE	rph	yicC	dinD
nutrient	M9 Glucose 0.2%, Thauer's vit mix without biotin with Avidin	+0.0	-6.7	-0.5	-0.2	-0.1
msc	22hr_MSC_rep1_highinoculum	-0.1	-6.8	+0.1	+0.1	-0.3
carbon source	Ying_AminoAcid20 rep A; time point 2	+0.0	-7.9	+0.3	+0.6	-0.1
carbon source	Ying_AminoAcid20 rep A; time point 3	-0.2	-7.9	+0.5	+0.9	-0.3
msc	22hr_mediaonly_rep1_lowinoculum	+0.1	-7.1	-0.1	+0.3	-0.1
carbon source	Ying_AminoAcid20 rep B; time point 3	+0.1	-7.6	+0.4	+0.8	-0.2
carbon source	carbon source D-Mannose 1mM	-0.0	-6.5	-0.6	+0.6	-0.1
carbon source	Ying_AminoAcid20 rep B; time point 2	-0.0	-7.3	+0.3	+0.6	-0.1
carbon source	Ying_OrganicAcid7 rep A; time point 3	+0.1	-7.7	+0.4	+1.0	-0.1
carbon source	Ying_OrganicAcid7 rep B; time point 3	+0.0	-7.4	+0.2	+0.9	-0.0
exudates	RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 0.5x	+0.0	-6.7	+0.7	+0.1	-0.1
carbon source	Ying_sugar7 rep B; time point 2	+0.1	-7.9	+1.9	+0.5	-0.1
carbon source	Ying_AminoAcid20 rep C; time point 3	-0.1	-6.8	+0.5	+1.0	-0.2
carbon source	Ying_sugar7 rep C; time point 2	+0.1	-7.9	+1.9	+0.5	-0.1
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.0	-6.3	+0.9	+0.3	-0.1
carbon source	Ying_sugar7 rep A; time point 2	+0.0	-7.4	+1.9	+0.5	-0.1
stress	RCH2_defined_1percent_glucose with Chloride 100 mM and Betaine 100 uM	-0.3	-6.8	+1.6	+0.8	-0.1
carbon source	Ying_OrganicAcid7 rep C; time point 3	+0.1	-6.1	+0.4	+0.9	-0.1
carbon source	Acetate (C)	-0.1	-5.6	+0.3	+1.4	-0.1
carbon source	Ying_sugar7 rep C; time point 3	-0.1	-7.6	+3.2	+0.7	-0.2
carbon source	Ying_sugar7 rep B; time point 3	+0.1	-7.7	+3.2	+0.7	-0.2
stress	RCH2_defined_1percent_glucose with Chloride 200 mM and Betaine 100 uM	-0.4	-5.4	+1.7	+0.3	-0.1
carbon source	Ying_sugar7 rep A; time point 3	+0.1	-7.7	+3.3	+0.6	-0.0
stress	RCH2_defined_1percent_glucose with Chloride 100 mM	-0.1	-5.6	+1.7	+0.4	-0.1
stress	RCH2_defined_1percent_glucose with Chloride 100 mM and Betaine 100 uM	-0.2	-4.9	+1.7	+0.4	-0.2
stress	RCH2_defined_1percent_glucose with Chloride 200 mM	-0.1	-5.0	+1.6	+0.6	-0.1
carbon source	LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C)	-0.0	-6.1	+1.5	+2.1	-0.1
carbon source	acetate (C)	-0.6	-3.6	+0.3	+3.3	-0.3
carbon source	L-Malic (C)	-0.4	-3.5	+0.5	+2.9	-0.1
carbon source	LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C)	-0.1	-4.0	+1.5	+2.3	-0.3