Fitness for 5 genes in Escherichia coli BW25113

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500 ntyibP and yibQ are separated by 3 nucleotidesyibQ and yibD overlap by 14 nucleotidesyibD and tdh are separated by 238 nucleotidestdh and kbl are separated by 9 nucleotides b3613: yibP - putative membrane protein (VIMSS), at 3,784,861 to 3,786,120 yibP b3614: yibQ - orf, hypothetical protein (VIMSS), at 3,786,124 to 3,787,083 yibQ b3615: yibD - predicted glycosyl transferase (NCBI), at 3,787,070 to 3,788,104 yibD b3616: tdh - L-threonine 3-dehydrogenase (NCBI), at 3,788,343 to 3,789,368 tdh b3617: kbl - 2-amino-3-ketobutyrate coenzyme A ligase (NCBI), at 3,789,378 to 3,790,574 kbl
Group Condition b3613 b3614 b3615 b3616 b3617
yibP yibQ yibD tdh kbl
motility outer cut, LB soft agar motility assay -5.1 -0.0 +0.1 -1.1 -3.1
stress Benzalkonium Chloride 0.004 mg/ml -2.7 +0.0 -0.2 -2.2 -2.6
phage Phage_N4_cage_3_mice _Feces_16 hr -6.1 +0.0 +0.1 -0.6 -0.6
control PBS_cage_2_mouse_3_Cecum_40 hr -5.3 +0.0 -0.3 -0.9 -0.6
phage Phage_N4_cage_3_mice _Feces_22 hr -6.1 +0.2 -0.0 -0.5 -0.6
stress toluene 2.5 vol% -4.0 -0.1 -0.0 -1.5 -1.3
control PBS_cage_2_mice _Feces_40 hr -5.4 -0.1 -0.2 -0.5 -0.8
phage Phage_N4_cage_4_mouse_3_Cecum_40 hr -5.9 +0.2 +0.1 -0.8 -0.5
control PBS_cage_2_mouse_2_Cecum_40 hr -5.4 -0.1 -0.0 -0.6 -0.8
phage Phage_N4_cage_3_mouse_2_Cecum_40 hr -5.9 +0.2 +0.0 -0.5 -0.5
phage Phage_N4_cage_4_mouse_1_Cecum_40 hr -6.0 +0.2 +0.2 -0.5 -0.6
control PBS_cage_2_mice _Feces_16 hr -5.9 +0.1 +0.0 -0.4 -0.4
control PBS_cage_1_mouse_1_Cecum_40 hr -5.1 -0.0 +0.1 -1.0 -0.5
phage Phage_N4_cage_4_mice _Feces_40 hr -6.0 +0.0 +0.2 -0.5 -0.2
control PBS_cage_2_mouse_1_Cecum_40 hr -5.3 +0.0 -0.2 -0.2 -0.9
stress Bacitracin 0.5 mg/ml -3.5 -0.1 +0.1 -1.7 -1.3
stress LB Anaerobic with Cephalothin 0.0000078125 mM -0.8 -0.2 +0.3 -2.8 -2.9
phage Phage_N4_cage_3_mice _Feces_40 hr -6.0 +0.4 +0.0 -0.5 -0.4
control PBS_cage_1_mouse_2_Cecum_40 hr -5.7 +0.0 +0.1 -0.3 -0.6
phage Phage_N4_cage_4_mouse_2_Cecum_40 hr -5.7 -0.0 +0.2 -0.5 -0.5
phage Phage_N4_cage_3_mouse_1_Cecum_40 hr -5.9 +0.3 -0.0 -0.6 -0.3
control PBS_cage_1_mice _Feces_40 hr -5.3 +0.1 +0.1 -0.6 -0.7
control PBS_cage_2_mice _Feces_22 hr -5.6 -0.0 +0.1 -0.1 -0.8
control PBS_cage_1_mice _Feces_22 hr -5.2 +0.2 -0.1 -0.6 -0.7
phage Phage_N4_cage_4_mice _Feces_16 hr -5.9 +0.2 +0.2 -0.4 -0.4
control PBS_cage_1_mice _Feces_16 hr -4.8 +0.3 -0.0 -0.8 -0.9
phage Phage_N4_cage_4_mice _Feces_22 hr -5.7 +0.0 +0.1 -0.2 -0.5
phage Phage_N4_cage_3_mouse_4_Cecum_40 hr -5.6 +0.4 -0.1 -0.6 -0.2
phage T7_phage 0.00015625 MOI TC3 +4.8 -0.0 +0.3 -2.2 -0.5
phage T7_phage 0.0015625 MOI TC2 +4.8 -0.1 -0.1 -1.1 -0.7
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