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Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
mtlA and mtlD are separated by 229 nucleotides
mtlD and mtlR overlap by 1 nucleotides
mtlR and yibT are separated by 11 nucleotides
yibT and yibL are separated by 284 nucleotides
b3599: mtlA - Mannitol phosphotransferase system, IIA/IIB/IIC components (EC 2.7.1.197)
(from data)
, at 3,770,304 to 3,772,217
mtlA
b3600: mtlD - mannitol-1-phosphate 5-dehydrogenase (NCBI), at 3,772,447 to 3,773,595
mtlD
b3601: mtlR - DNA-binding repressor (NCBI), at 3,773,595 to 3,774,182
mtlR
b4554: yibT - hypothetical protein (NCBI), at 3,774,194 to 3,774,403
yibT
b3602: yibL - hypothetical protein (NCBI), at 3,774,688 to 3,775,050
yibL
Group
Condition
b3599
b3600
b3601
b4554
b3602
mtlA
mtlD
mtlR
yibT
yibL
carbon source
Carbon source D-Mannitol 5 mM
-1.7
-5.8
+0.3
-0.0
+0.1
carbon source
Carbon source D-Mannitol 10 mM
-1.2
-5.6
+0.3
+0.2
-0.1
carbon source
Carbon source D-Mannitol 5 mM
-1.8
-4.7
+0.2
+0.0
+0.0
carbon source
Carbon source D-Mannitol 2.5 mM
-1.7
-4.1
+0.1
-0.1
-0.2
carbon source
Carbon source D-Mannitol 10 mM
-1.2
-5.0
+0.4
-0.0
-0.0
carbon source
Carbon source D-Mannitol 2.5 mM
-1.7
-4.2
+0.2
-0.0
-0.0
carbon source
D-Sorbitol (C)
-1.0
-4.1
-0.1
+0.2
-0.5
carbon source
D-Sorbitol (C)
-0.9
-4.3
-0.0
-0.1
+0.1
stress
LB Anaerobic with Benzethonium chloride 0.00003125 mM
-0.2
-2.8
-0.7
-0.4
-0.4
stress
2,4-Dinitrophenol 2 mM
-0.1
-0.6
-3.2
-0.1
-0.1
control
PBS_cage_2_mouse_1_Cecum_40 hr
-0.3
-1.6
-0.4
-0.8
-0.5
carbon source
Glycolic Acid (C)
+0.2
-0.3
-3.5
+0.2
-0.0
carbon source
Glycolic Acid (C)
+0.3
-0.2
-3.1
+0.1
-0.4
stress
LB Aerobic with Spiramycin 0.0000625 mM
-0.0
-2.8
-0.4
-0.4
+0.2
stress
2,4-Dinitrophenol 2 mM
+0.1
-0.5
-2.8
-0.0
+0.0
stress
LB Aerobic with Spiramycin 0.000125 mM
+0.1
-2.4
-0.3
-0.5
-0.1
motility
outer cut, LB soft agar motility assay
+0.1
-0.5
-2.1
-0.8
+0.2
stress
LB Aerobic with Ramoplanin 0.000125 mM
-0.2
-2.5
-0.6
+0.1
-0.0
carbon source
a-Ketoglutaric (C)
+0.1
-0.4
-2.2
-0.1
-0.4
stress
Benzalkonium Chloride 0.004 mg/ml
+0.2
-0.8
-1.5
-0.8
+0.0
stress
LB Aerobic with Spiramycin 0.0000625 mM
+0.1
-3.0
+0.0
+0.2
-0.1
stress
LB Aerobic with Spiramycin 0.000125 mM
+0.0
-2.7
-0.1
-0.2
+0.3
carbon source
Ying_sugar7 rep A; time point 3
+0.3
-2.0
-0.6
-0.2
-0.1
carbon source
Ying_sugar7 rep C; time point 3
+0.3
-2.1
-0.2
-0.3
-0.3
plasmid transformation
vcDART vector transformation; liquid outgrowth assay
-0.0
+0.8
-3.2
-0.1
+0.1
plasmid transformation
mariner vector transformation; liquid outgrowth assay
+0.4
+0.4
-2.3
-0.5
+0.6
plasmid transformation
mariner vector transformation; liquid outgrowth assay
+0.2
+0.2
-2.2
+0.4
+0.3
plasmid transformation
mariner vector transformation; liquid outgrowth assay
+0.2
+0.9
-2.4
-0.0
+0.3
plasmid transformation
vcDART vector transformation; liquid outgrowth assay
+0.3
+0.6
-2.2
+0.6
+0.2
plasmid transformation
vcDART vector transformation; liquid outgrowth assay
-0.0
+0.5
-1.3
+0.9
+1.0
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