Fitness for 5 genes in Escherichia coli BW25113

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500 ntxylG and xylH overlap by 23 nucleotidesxylH and xylR are separated by 77 nucleotidesxylR and bax are separated by 195 nucleotidesbax and malS are separated by 319 nucleotides b3567: xylG - fused D-xylose transporter subunits of ABC superfamily: ATP-binding components (NCBI), at 3,730,224 to 3,731,765 xylG b3568: xylH - D-xylose transporter subunit (NCBI), at 3,731,743 to 3,732,924 xylH b3569: xylR - DNA-binding transcriptional activator, xylose-binding (NCBI), at 3,733,002 to 3,734,180 xylR b3570: bax - hypothetical protein (NCBI), at 3,734,376 to 3,735,200 bax b3571: malS - periplasmic alpha-amylase precursor (NCBI), at 3,735,520 to 3,737,550 malS
Group Condition b3567 b3568 b3569 b3570 b3571
xylG xylH xylR bax malS
carbon source D-Xylose (C) -0.9 +0.1 -4.0 -0.0 -0.0
carbon source D-Xylose (C) -1.0 -0.0 -3.3 -0.2 -0.1
stress Bacitracin 1 mg/ml +0.0 -0.1 -0.2 -2.2 +0.1
stress Trimethoprim 0.00125 mM -0.1 -0.1 -0.1 -1.5 +0.0
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM -0.3 +0.5 +0.1 -1.8 +0.0
stress Trimethoprim 0.0025 mM -0.1 -0.3 +0.0 -1.1 -0.0
stress Cephalothin 0.01 mg/ml -0.0 -0.3 -0.3 -1.0 +0.2
stress LB Anaerobic with Vancomycin Hydrochloride from Streptomyces orientalis 0.00003125 mM -0.0 -0.2 +0.1 -1.1 +0.0
stress LB Anaerobic with Vancomycin Hydrochloride from Streptomyces orientalis 0.00003125 mM +0.0 -0.3 -0.0 -0.9 -0.0
stress LB Anaerobic with Cephalothin 0.0000078125 mM -0.1 -0.1 -0.2 -1.1 +0.4
phage Δdbn_10 +0.0 -0.4 -0.0 -0.0 -0.7
predation 6 hr rep1_HD100_10fold_dilution_grewON -0.0 -0.8 -0.3 +0.1 -0.0
stress LB Anaerobic with Amoxicillin 0.0000078125 mM -0.2 -0.2 +0.0 -0.7 +0.2
carbon source carbon source D-Glucose 0.25mM +0.0 +0.1 -0.2 -0.4 -0.4
stress LB Anaerobic with Ampicillin 0.00000195313 mM +0.1 -0.0 -0.2 -0.9 +0.2
carbon source carbon source D-Glucose 0.25mM -0.1 -0.9 +0.1 +0.3 -0.2
carbon source carbon source D-Mannose 1mM -0.1 -0.3 -0.3 +0.1 -0.3
stress LB Anaerobic with Cephalothin 0.0000078125 mM -0.1 +0.3 -0.2 -0.9 +0.2
carbon source D-Ribose (C) -0.2 +0.4 -0.6 -0.3 +0.0
gfp_control GFP_control -0.0 +0.3 -0.3 -0.2 -0.2
carbon source D-Ribose (C) -0.1 +0.4 -0.5 -0.2 +0.0
stress Bacitracin 0.5 mg/ml +0.0 +0.1 -0.1 -0.7 +0.2
phage Ste41 -0.1 -0.7 +0.2 +0.5 +0.1
stress LB Anaerobic with Nitrofurantoin 0.00003125 mM -0.2 -0.5 +0.3 +0.1 +0.3
micoeukaryotes Tetrahymena sp., Mixed culture-1 +0.0 +0.6 +0.2 -0.6 -0.1
motility outer cut, LB soft agar motility assay +0.1 -0.2 +0.3 +0.5 -0.3
plasmid transformation vcDART vector transformation; liquid outgrowth assay -0.1 -0.4 -0.0 +0.8 +0.3
stress 3-methyl-1-butanol 1.25 vol% +0.1 +0.3 +0.5 -0.2 +0.0
stress 1-ethyl-3-methylimidazolium chloride 80 mM +0.1 +0.3 +0.2 +0.8 -0.1
motility inner cut, LB soft agar motility assay +0.2 +0.2 +0.2 +0.2 +0.5
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