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Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
acpT and nikA are separated by 110 nucleotides
nikA and nikB overlap by 1 nucleotides
nikB and nikC overlap by 4 nucleotides
nikC and nikD overlap by 1 nucleotides
b3475: acpT - holo-(acyl carrier protein) synthase 2 (NCBI), at 3,610,992 to 3,611,579
acpT
b3476: nikA - nickel transporter subunit (NCBI), at 3,611,690 to 3,613,264
nikA
b3477: nikB - nickel transporter subunit (NCBI), at 3,613,264 to 3,614,208
nikB
b3478: nikC - nickel transporter subunit (NCBI), at 3,614,205 to 3,615,038
nikC
b3479: nikD - nickel transporter subunit (NCBI), at 3,615,038 to 3,615,802
nikD
Group
Condition
b3475
b3476
b3477
b3478
b3479
acpT
nikA
nikB
nikC
nikD
stress
LB Anaerobic with Cephalothin 0.0000078125 mM
+0.1
-1.5
-0.9
-1.5
-1.5
stress
LB Anaerobic with Chloramphenicol 0.000001953125 mM
-0.1
-1.5
-1.2
-1.1
-1.4
stress
LB Anaerobic with Doxycycline hyclate 0.000000390625 mM
-0.5
-1.2
-1.1
-1.0
-0.9
stress
LB Anaerobic with Chloramphenicol 0.00000390625 mM
-0.8
-0.7
-0.9
-1.1
-0.7
stress
LB Anaerobic with Chloramphenicol 0.00000390625 mM
-0.4
-1.0
-0.7
-0.9
-0.9
lb
LB, Anaerobic
-0.1
-0.9
-1.0
-0.9
-1.0
stress
LB Anaerobic with Tetracycline 0.000000078125 mM
-0.4
-0.9
-0.6
-0.8
-0.9
stress
LB Anaerobic with Norfloxacin 0.0000000390625 mM
+0.2
-0.5
-0.9
-1.0
-1.1
stress
LB Anaerobic with Sulfamonomethoxine 0.00003125 mM
+0.3
-0.8
-0.7
-1.1
-1.0
stress
LB Anaerobic with Tetracycline 0.0000003125 mM
-0.3
-0.6
-0.7
-0.9
-0.9
stress
LB Anaerobic with Furaltadone 0.000015625 mM
-0.2
-0.7
-0.5
-0.9
-0.9
stress
LB Anaerobic with Sulfamonomethoxine 0.0000625 mM
+0.1
-0.8
-0.7
-0.8
-0.9
stress
LB Anaerobic with Irgasan 0.000000625 mM
-0.2
-0.9
-0.6
-0.8
-0.7
lb anaerobic no stress control
LB anaerobic no stress control
+0.1
-0.7
-0.8
-0.8
-0.9
stress
LB Anaerobic with Oxytetracycline 0.0000003125 mM
-0.0
-0.8
-0.7
-0.8
-0.7
stress
LB Anaerobic with Tetracycline 0.0000003125 mM
-0.1
-0.8
-0.6
-0.9
-0.7
stress
LB Anaerobic with Chloramphenicol 0.000001953125 mM
-0.1
-0.8
-0.7
-0.7
-0.7
stress
LB Anaerobic with Cephalothin 0.0000078125 mM
+0.4
-0.7
-0.8
-0.6
-1.3
stress
LB Anaerobic with Chlorhexidine diacetate salt 0.000000625 mM
-0.0
-0.9
-0.9
-0.5
-0.7
stress
LB Anaerobic with Nalidixic 0.00000195313 mM
-0.0
-0.8
-0.7
-0.9
-0.6
stress
LB Anaerobic with Doxycycline hyclate 0.00000078125 mM
-0.2
-0.8
-0.7
-0.7
-0.6
stress
LB Anaerobic with Doxycycline hyclate 0.000000390625 mM
-0.2
-0.7
-0.5
-0.8
-0.8
stress
LB Anaerobic with Furaltadone 0.00000390625 mM
-0.3
-0.6
-0.5
-0.7
-0.9
stress
LB Anaerobic with Doxycycline hyclate 0.00000078125 mM
-0.2
-0.6
-0.7
-0.7
-0.8
stress
LB Anaerobic with Irgasan 0.000000625 mM
-0.3
-0.8
-0.7
-0.5
-0.6
stress
LB Anaerobic with Spectinomycin 0.00003125 mM
-0.4
-0.9
-0.5
-0.6
-0.6
lb anaerobic no stress control
LB anaerobic no stress control
+0.0
-0.8
-0.7
-0.7
-0.6
stress
LB Anaerobic Allura Red AC 250 uM
+0.2
-0.7
-0.6
-0.7
-0.7
stress
LB Anaerobic Allura Red AC 250 uM
+0.2
-0.6
-0.6
-0.6
-0.8
phage
Papa dilution 10-1 cacl2 maltose
+0.2
+0.6
+0.9
+1.5
+1.5
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