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Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
yhhS and yhhT are separated by 131 nucleotides
yhhT and acpT are separated by 54 nucleotides
acpT and nikA are separated by 110 nucleotides
nikA and nikB overlap by 1 nucleotides
b3473: yhhS - putative transport (VIMSS), at 3,608,539 to 3,609,756
yhhS
b3474: yhhT - orf, hypothetical protein (VIMSS), at 3,609,888 to 3,610,937
yhhT
b3475: acpT - holo-(acyl carrier protein) synthase 2 (NCBI), at 3,610,992 to 3,611,579
acpT
b3476: nikA - nickel transporter subunit (NCBI), at 3,611,690 to 3,613,264
nikA
b3477: nikB - nickel transporter subunit (NCBI), at 3,613,264 to 3,614,208
nikB
Group
Condition
b3473
b3474
b3475
b3476
b3477
yhhS
yhhT
acpT
nikA
nikB
stress
LB Anaerobic with Chloramphenicol 0.000001953125 mM
-0.2
-0.3
-0.1
-1.5
-1.2
stress
LB Anaerobic with Doxycycline hyclate 0.000000390625 mM
-0.2
+0.0
-0.5
-1.2
-1.1
stress
LB Anaerobic with Cephalothin 0.0000078125 mM
-0.2
-0.3
+0.1
-1.5
-0.9
stress
LB Anaerobic with Chloramphenicol 0.00000390625 mM
-0.0
-0.1
-0.8
-0.7
-0.9
stress
LB Anaerobic with 8-hydroxy-nitroquinoline 0.00000125 mM
-0.1
-0.2
-0.7
-0.5
-0.4
mixed community control
mixed community control
+0.0
-0.5
-0.9
-0.4
-0.2
stress
LB Anaerobic with Chloramphenicol 0.00000390625 mM
+0.1
+0.1
-0.4
-1.0
-0.7
stress
LB Anaerobic with Cephalothin 0.0000078125 mM
-0.4
-0.5
+0.4
-0.7
-0.8
stress
LB Anaerobic with Tetracycline 0.000000078125 mM
-0.0
-0.1
-0.4
-0.9
-0.6
stress
LB Anaerobic with Chlorhexidine diacetate salt 0.000000625 mM
+0.0
-0.1
-0.0
-0.9
-0.9
lb
LB, Anaerobic
-0.1
+0.2
-0.1
-0.9
-1.0
stress
LB Anaerobic with Irgasan 0.000000625 mM
-0.1
-0.1
-0.2
-0.9
-0.6
lb
LB, Anaerobic
-0.1
-0.2
-0.3
-0.6
-0.6
stress
LB Anaerobic with Doxycycline hyclate 0.00000078125 mM
-0.1
-0.0
-0.2
-0.8
-0.7
stress
LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM
-0.3
-0.4
-0.7
+0.2
-0.5
stress
LB Anaerobic with Chloramphenicol 0.000001953125 mM
-0.1
+0.1
-0.1
-0.8
-0.7
stress
LB Anaerobic with Spectinomycin 0.00003125 mM
+0.1
-0.1
-0.4
-0.9
-0.5
stress
LB Anaerobic with Irgasan 0.000000625 mM
-0.1
+0.2
-0.3
-0.8
-0.7
stress
LB Anaerobic with Ceftriaxone hemi(heptahydrate) 0.00000015625 mM
+0.1
-0.2
-0.2
-0.7
-0.6
stress
LB Anaerobic with Sulfamonomethoxine 0.00003125 mM
-0.2
+0.1
+0.3
-0.8
-0.7
stress
LB Anaerobic with Oxytetracycline 0.0000003125 mM
+0.1
+0.2
-0.0
-0.8
-0.7
lb
LB, Anaerobic
-0.1
+0.0
+0.2
-0.7
-0.7
stress
LB Anaerobic with Norfloxacin 0.0000000390625 mM
-0.1
+0.1
+0.2
-0.5
-0.9
stress
LB Anaerobic with Benzethonium chloride 0.00003125 mM
-0.1
+0.9
-1.8
+0.0
+0.1
stress
LB Anaerobic with Vancomycin Hydrochloride from Streptomyces orientalis 0.00003125 mM
-0.4
+0.8
-0.8
-0.2
-0.2
stress
LB Aerobic with Ramoplanin 0.000125 mM
-0.1
+0.4
-1.2
+0.1
+0.0
carbon source
carbon source D-Glucose 0.25mM
-0.3
-0.3
+0.3
+0.3
-0.6
stress
LB Anaerobic with Vancomycin Hydrochloride from Streptomyces orientalis 0.00003125 mM
-0.1
+0.9
-0.8
-0.2
+0.0
phage
Papa dilution 10-1 cacl2 maltose
+0.2
+0.1
+0.2
+0.6
+0.9
phage
N4_phage 0.009375 MOI TC2
+0.5
+0.5
+0.0
+0.6
+0.4
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