Fitness for 5 genes in Escherichia coli BW25113

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500 ntlivH and livK are separated by 47 nucleotideslivK and yhhK are separated by 423 nucleotidesyhhK and livJ are separated by 187 nucleotideslivJ and rpoH are separated by 270 nucleotides b3457: livH - leucine/isoleucine/valine transporter subunit (NCBI), at 3,593,500 to 3,594,426 livH b3458: livK - leucine transporter subunit (NCBI), at 3,594,474 to 3,595,583 livK b3459: yhhK - hypothetical protein (NCBI), at 3,596,007 to 3,596,390 yhhK b3460: livJ - leucine/isoleucine/valine transporter subunit (NCBI), at 3,596,578 to 3,597,681 livJ b3461: rpoH - RNA polymerase sigma factor (NCBI), at 3,597,952 to 3,598,806 rpoH
Group Condition b3457 b3458 b3459 b3460 b3461
livH livK yhhK livJ rpoH
carbon source Acetate (C) -1.6 -0.9 -0.5 -1.4 N.D.
carbon source Acetate (C) -1.3 -0.7 -0.6 -1.4 N.D.
carbon source Glycolic Acid (C) -1.7 -0.6 +0.2 -1.2 N.D.
nitrogen source D-Alanine (N) -0.4 -0.0 -2.7 -0.2 N.D.
nitrogen source Adenosine (N) -0.0 -0.0 -3.1 -0.0 N.D.
carbon source D-Glucose (C) MOPS -0.2 +0.2 -2.2 -0.4 N.D.
carbon source Glycolic Acid (C) -1.4 -0.6 +0.8 -1.1 N.D.
protonated/deuterated protonated control +0.7 +0.6 -0.9 +0.9 N.D.
protonated/deuterated protonated control +1.0 +0.7 -0.5 +1.0 N.D.
protonated/deuterated protonated control +1.1 +0.7 -0.6 +1.2 N.D.
mixed community Mixed culture; Bdellovibrio bacteriovorus HD100 1:100 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan +1.2 +0.7 +0.1 +1.2 N.D.
mixed community Mixed culture; Bdellovibrio bacteriovorus HD100 1:100 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan +1.2 +0.8 +0.1 +1.2 N.D.
nitrogen source D-Serine (N) +2.4 +1.6 -2.6 +2.1 N.D.
nitrogen source D-Serine (N) +2.4 +1.5 -2.4 +2.1 N.D.
protonated/deuterated deuterated glucose in H2O +1.2 +1.2 -0.3 +1.7 N.D.
carbon source D-Glucuronic Acid (C) +1.3 +1.2 +0.1 +1.5 N.D.
carbon source D-Glucuronic Acid (C) +1.3 +1.2 +0.2 +1.4 N.D.
carbon source Glucose (C) +1.5 +1.4 +0.0 +1.5 N.D.
protonated/deuterated deuterated glucose in H2O +1.9 +1.2 -0.4 +1.8 N.D.
carbon source Glucose (C) +1.5 +1.3 +0.3 +1.5 N.D.
mixed community Mixed culture; Bdellovibrio bacteriovorus str. Tiberius 1:100 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan +2.6 +1.5 -0.1 +2.0 N.D.
mixed community Mixed culture; Bdellovibrio bacteriovorus str. Tiberius 1:100 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan +2.6 +1.6 -0.0 +2.0 N.D.
protonated/deuterated protonated glucose in D2O +3.1 +1.9 +0.3 +1.9 N.D.
protonated/deuterated protonated glucose in D2O +3.3 +2.0 +0.1 +1.8 N.D.
protonated/deuterated protonated glucose in D2O +3.3 +2.0 +0.5 +1.9 N.D.
protonated/deuterated deuterated glucose in D2O +4.5 +2.5 +0.3 +2.4 N.D.
protonated/deuterated deuterated glucose in D2O +4.6 +2.7 +0.3 +2.4 N.D.
protonated/deuterated deuterated glucose in D2O +5.0 +3.0 +0.5 +2.7 N.D.
carbon source D-Serine (C) +8.2 +4.9 +0.3 +5.7 N.D.
carbon source D-Serine (C) +8.2 +4.9 +0.2 +5.9 N.D.
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