Fitness for 5 genes in Escherichia coli BW25113

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500 ntlivG and livM overlap by 4 nucleotideslivM and livH overlap by 4 nucleotideslivH and livK are separated by 47 nucleotideslivK and yhhK are separated by 423 nucleotides b3455: livG - leucine/isoleucine/valine transporter subunit (NCBI), at 3,591,462 to 3,592,229 livG b3456: livM - leucine/isoleucine/valine transporter subunit (NCBI), at 3,592,226 to 3,593,503 livM b3457: livH - leucine/isoleucine/valine transporter subunit (NCBI), at 3,593,500 to 3,594,426 livH b3458: livK - leucine transporter subunit (NCBI), at 3,594,474 to 3,595,583 livK b3459: yhhK - hypothetical protein (NCBI), at 3,596,007 to 3,596,390 yhhK
Group Condition b3455 b3456 b3457 b3458 b3459
livG livM livH livK yhhK
carbon source Acetate (C) -0.5 -1.7 -1.6 -0.9 -0.5
carbon source Glycolic Acid (C) -1.3 -1.4 -1.7 -0.6 +0.2
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) -1.0 -1.2 -1.2 -0.6 +0.1
carbon source Acetate (C) -0.3 -1.2 -1.3 -0.7 -0.6
carbon source Glycolic Acid (C) -1.5 -1.1 -1.4 -0.6 +0.8
carbon source LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C) -0.4 -1.4 -1.2 -0.8 +0.1
protonated/deuterated protonated control +0.9 +1.1 +0.7 +0.6 -0.9
protonated/deuterated protonated control +1.1 +1.1 +1.0 +0.7 -0.5
protonated/deuterated protonated control +1.1 +1.3 +1.1 +0.7 -0.6
predation 48 hr rep2_Tiberius_no_dilution +1.5 +1.3 +1.2 +0.5 +0.1
mixed community Mixed culture; Bdellovibrio bacteriovorus HD100 1:100 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan +1.2 +1.3 +1.2 +0.8 +0.1
mixed community Mixed culture; Bdellovibrio bacteriovorus HD100 1:100 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan +1.3 +1.3 +1.2 +0.7 +0.1
protonated/deuterated deuterated glucose in H2O +1.4 +1.8 +1.2 +1.2 -0.3
carbon source D-Glucuronic Acid (C) +1.6 +1.6 +1.3 +1.2 +0.1
carbon source D-Glucuronic Acid (C) +1.6 +1.6 +1.3 +1.2 +0.2
carbon source Glucose (C) +1.7 +1.5 +1.5 +1.4 +0.0
nitrogen source D-Serine (N) +2.2 +2.5 +2.4 +1.5 -2.4
nitrogen source D-Serine (N) +2.4 +2.6 +2.4 +1.6 -2.6
carbon source Glucose (C) +1.7 +1.7 +1.5 +1.3 +0.3
protonated/deuterated deuterated glucose in H2O +2.0 +1.9 +1.9 +1.2 -0.4
mixed community Mixed culture; Bdellovibrio bacteriovorus str. Tiberius 1:100 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan +2.5 +2.7 +2.6 +1.5 -0.1
mixed community Mixed culture; Bdellovibrio bacteriovorus str. Tiberius 1:100 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan +2.6 +2.7 +2.6 +1.6 -0.0
protonated/deuterated protonated glucose in D2O +3.3 +3.2 +3.1 +1.9 +0.3
protonated/deuterated protonated glucose in D2O +3.4 +3.3 +3.3 +2.0 +0.1
protonated/deuterated protonated glucose in D2O +3.3 +3.4 +3.3 +2.0 +0.5
protonated/deuterated deuterated glucose in D2O +4.6 +4.5 +4.5 +2.5 +0.3
protonated/deuterated deuterated glucose in D2O +4.8 +4.8 +4.6 +2.7 +0.3
protonated/deuterated deuterated glucose in D2O +5.1 +5.0 +5.0 +3.0 +0.5
carbon source D-Serine (C) +8.5 +8.5 +8.2 +4.9 +0.3
carbon source D-Serine (C) +8.6 +8.5 +8.2 +4.9 +0.2
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