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Protein
Homologs
Fitness for 5 genes in
Escherichia coli BW25113
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
livG and livM overlap by 4 nucleotides
livM and livH overlap by 4 nucleotides
livH and livK are separated by 47 nucleotides
livK and yhhK are separated by 423 nucleotides
b3455: livG - leucine/isoleucine/valine transporter subunit (NCBI), at 3,591,462 to 3,592,229
livG
b3456: livM - leucine/isoleucine/valine transporter subunit (NCBI), at 3,592,226 to 3,593,503
livM
b3457: livH - leucine/isoleucine/valine transporter subunit (NCBI), at 3,593,500 to 3,594,426
livH
b3458: livK - leucine transporter subunit (NCBI), at 3,594,474 to 3,595,583
livK
b3459: yhhK - hypothetical protein (NCBI), at 3,596,007 to 3,596,390
yhhK
Group
Condition
b3455
b3456
b3457
b3458
b3459
livG
livM
livH
livK
yhhK
carbon source
Acetate (C)
-0.5
-1.7
-1.6
-0.9
-0.5
carbon source
Glycolic Acid (C)
-1.3
-1.4
-1.7
-0.6
+0.2
carbon source
LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C)
-1.0
-1.2
-1.2
-0.6
+0.1
carbon source
Acetate (C)
-0.3
-1.2
-1.3
-0.7
-0.6
carbon source
Glycolic Acid (C)
-1.5
-1.1
-1.4
-0.6
+0.8
carbon source
LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C)
-0.4
-1.4
-1.2
-0.8
+0.1
protonated/deuterated
protonated control
+0.9
+1.1
+0.7
+0.6
-0.9
protonated/deuterated
protonated control
+1.1
+1.1
+1.0
+0.7
-0.5
protonated/deuterated
protonated control
+1.1
+1.3
+1.1
+0.7
-0.6
predation
48 hr rep2_Tiberius_no_dilution
+1.5
+1.3
+1.2
+0.5
+0.1
mixed community
Mixed culture; Bdellovibrio bacteriovorus HD100 1:100 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan
+1.2
+1.3
+1.2
+0.8
+0.1
mixed community
Mixed culture; Bdellovibrio bacteriovorus HD100 1:100 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan
+1.3
+1.3
+1.2
+0.7
+0.1
protonated/deuterated
deuterated glucose in H2O
+1.4
+1.8
+1.2
+1.2
-0.3
carbon source
D-Glucuronic Acid (C)
+1.6
+1.6
+1.3
+1.2
+0.1
carbon source
D-Glucuronic Acid (C)
+1.6
+1.6
+1.3
+1.2
+0.2
carbon source
Glucose (C)
+1.7
+1.5
+1.5
+1.4
+0.0
nitrogen source
D-Serine (N)
+2.2
+2.5
+2.4
+1.5
-2.4
nitrogen source
D-Serine (N)
+2.4
+2.6
+2.4
+1.6
-2.6
carbon source
Glucose (C)
+1.7
+1.7
+1.5
+1.3
+0.3
protonated/deuterated
deuterated glucose in H2O
+2.0
+1.9
+1.9
+1.2
-0.4
mixed community
Mixed culture; Bdellovibrio bacteriovorus str. Tiberius 1:100 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan
+2.5
+2.7
+2.6
+1.5
-0.1
mixed community
Mixed culture; Bdellovibrio bacteriovorus str. Tiberius 1:100 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan
+2.6
+2.7
+2.6
+1.6
-0.0
protonated/deuterated
protonated glucose in D2O
+3.3
+3.2
+3.1
+1.9
+0.3
protonated/deuterated
protonated glucose in D2O
+3.4
+3.3
+3.3
+2.0
+0.1
protonated/deuterated
protonated glucose in D2O
+3.3
+3.4
+3.3
+2.0
+0.5
protonated/deuterated
deuterated glucose in D2O
+4.6
+4.5
+4.5
+2.5
+0.3
protonated/deuterated
deuterated glucose in D2O
+4.8
+4.8
+4.6
+2.7
+0.3
protonated/deuterated
deuterated glucose in D2O
+5.1
+5.0
+5.0
+3.0
+0.5
carbon source
D-Serine (C)
+8.5
+8.5
+8.2
+4.9
+0.3
carbon source
D-Serine (C)
+8.6
+8.5
+8.2
+4.9
+0.2
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