Fitness for 5 genes in Escherichia coli BW25113

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500 ntugpA and ugpB are separated by 97 nucleotidesugpB and livF are separated by 398 nucleotideslivF and livG are separated by 1 nucleotideslivG and livM overlap by 4 nucleotides b3452: ugpA - glycerol-3-phosphate transporter subunit (NCBI), at 3,588,047 to 3,588,934 ugpA b3453: ugpB - glycerol-3-phosphate transporter subunit (NCBI), at 3,589,032 to 3,590,348 ugpB b3454: livF - ATP-binding component of leucine transport (VIMSS), at 3,590,747 to 3,591,460 livF b3455: livG - leucine/isoleucine/valine transporter subunit (NCBI), at 3,591,462 to 3,592,229 livG b3456: livM - leucine/isoleucine/valine transporter subunit (NCBI), at 3,592,226 to 3,593,503 livM
Group Condition b3452 b3453 b3454 b3455 b3456
ugpA ugpB livF livG livM
carbon source Glycolic Acid (C) -0.1 +0.3 -1.6 -1.3 -1.4
carbon source Glycolic Acid (C) -0.0 +0.0 -1.5 -1.5 -1.1
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) -0.1 +0.1 -0.5 -1.0 -1.2
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) -0.1 -0.1 -0.6 -0.8 -1.0
protonated/deuterated deuterated glucose in H2O -0.2 +0.0 +0.7 +0.9 +0.9
predation 48 hr rep3_Tiberius_no_dilution +0.1 +0.1 +0.6 +0.9 +0.9
protonated/deuterated protonated control -0.2 +0.2 +0.7 +0.9 +1.1
protonated/deuterated protonated control -0.1 +0.1 +1.0 +1.1 +1.1
protonated/deuterated protonated control -0.1 +0.1 +0.8 +1.1 +1.3
predation 48 hr rep2_Tiberius_no_dilution +0.0 +0.1 +1.0 +1.5 +1.3
mixed community Mixed culture; Bdellovibrio bacteriovorus HD100 1:100 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan +0.0 +0.1 +1.2 +1.2 +1.3
mixed community Mixed culture; Bdellovibrio bacteriovorus HD100 1:100 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan -0.0 +0.0 +1.2 +1.3 +1.3
carbon source D-Glucuronic Acid (C) +0.0 -0.0 +1.4 +1.6 +1.6
carbon source D-Glucuronic Acid (C) -0.0 +0.1 +1.5 +1.6 +1.6
carbon source Glucose (C) -0.1 +0.0 +1.6 +1.7 +1.5
carbon source Glucose (C) -0.0 +0.1 +1.6 +1.7 +1.7
protonated/deuterated deuterated glucose in H2O +0.2 +0.0 +1.6 +1.4 +1.8
protonated/deuterated deuterated glucose in H2O -0.2 -0.1 +1.7 +2.0 +1.9
nitrogen source D-Serine (N) -0.1 +0.0 +2.5 +2.2 +2.5
nitrogen source D-Serine (N) -0.2 -0.1 +2.6 +2.4 +2.6
mixed community Mixed culture; Bdellovibrio bacteriovorus str. Tiberius 1:100 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan -0.0 +0.0 +2.5 +2.6 +2.7
mixed community Mixed culture; Bdellovibrio bacteriovorus str. Tiberius 1:100 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan -0.0 +0.1 +2.6 +2.5 +2.7
protonated/deuterated protonated glucose in D2O -0.2 -0.1 +3.1 +3.3 +3.2
protonated/deuterated protonated glucose in D2O -0.2 +0.1 +3.2 +3.3 +3.4
protonated/deuterated protonated glucose in D2O -0.2 +0.0 +3.3 +3.4 +3.3
protonated/deuterated deuterated glucose in D2O +0.0 -0.0 +4.5 +4.6 +4.5
protonated/deuterated deuterated glucose in D2O -0.1 +0.0 +4.7 +4.8 +4.8
protonated/deuterated deuterated glucose in D2O -0.2 +0.1 +5.0 +5.1 +5.0
carbon source D-Serine (C) +0.0 +0.0 +8.2 +8.5 +8.5
carbon source D-Serine (C) +0.1 +0.1 +8.2 +8.6 +8.5
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