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Fitness for 5 genes in
Escherichia coli BW25113
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ugpA and ugpB are separated by 97 nucleotides
ugpB and livF are separated by 398 nucleotides
livF and livG are separated by 1 nucleotides
livG and livM overlap by 4 nucleotides
b3452: ugpA - glycerol-3-phosphate transporter subunit (NCBI), at 3,588,047 to 3,588,934
ugpA
b3453: ugpB - glycerol-3-phosphate transporter subunit (NCBI), at 3,589,032 to 3,590,348
ugpB
b3454: livF - ATP-binding component of leucine transport (VIMSS), at 3,590,747 to 3,591,460
livF
b3455: livG - leucine/isoleucine/valine transporter subunit (NCBI), at 3,591,462 to 3,592,229
livG
b3456: livM - leucine/isoleucine/valine transporter subunit (NCBI), at 3,592,226 to 3,593,503
livM
Group
Condition
b3452
b3453
b3454
b3455
b3456
ugpA
ugpB
livF
livG
livM
carbon source
Glycolic Acid (C)
-0.1
+0.3
-1.6
-1.3
-1.4
carbon source
Glycolic Acid (C)
-0.0
+0.0
-1.5
-1.5
-1.1
carbon source
LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C)
-0.1
+0.1
-0.5
-1.0
-1.2
carbon source
LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C)
-0.1
-0.1
-0.6
-0.8
-1.0
protonated/deuterated
deuterated glucose in H2O
-0.2
+0.0
+0.7
+0.9
+0.9
predation
48 hr rep3_Tiberius_no_dilution
+0.1
+0.1
+0.6
+0.9
+0.9
protonated/deuterated
protonated control
-0.2
+0.2
+0.7
+0.9
+1.1
protonated/deuterated
protonated control
-0.1
+0.1
+1.0
+1.1
+1.1
protonated/deuterated
protonated control
-0.1
+0.1
+0.8
+1.1
+1.3
predation
48 hr rep2_Tiberius_no_dilution
+0.0
+0.1
+1.0
+1.5
+1.3
mixed community
Mixed culture; Bdellovibrio bacteriovorus HD100 1:100 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan
+0.0
+0.1
+1.2
+1.2
+1.3
mixed community
Mixed culture; Bdellovibrio bacteriovorus HD100 1:100 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan
-0.0
+0.0
+1.2
+1.3
+1.3
carbon source
D-Glucuronic Acid (C)
+0.0
-0.0
+1.4
+1.6
+1.6
carbon source
D-Glucuronic Acid (C)
-0.0
+0.1
+1.5
+1.6
+1.6
carbon source
Glucose (C)
-0.1
+0.0
+1.6
+1.7
+1.5
carbon source
Glucose (C)
-0.0
+0.1
+1.6
+1.7
+1.7
protonated/deuterated
deuterated glucose in H2O
+0.2
+0.0
+1.6
+1.4
+1.8
protonated/deuterated
deuterated glucose in H2O
-0.2
-0.1
+1.7
+2.0
+1.9
nitrogen source
D-Serine (N)
-0.1
+0.0
+2.5
+2.2
+2.5
nitrogen source
D-Serine (N)
-0.2
-0.1
+2.6
+2.4
+2.6
mixed community
Mixed culture; Bdellovibrio bacteriovorus str. Tiberius 1:100 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan
-0.0
+0.0
+2.5
+2.6
+2.7
mixed community
Mixed culture; Bdellovibrio bacteriovorus str. Tiberius 1:100 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan
-0.0
+0.1
+2.6
+2.5
+2.7
protonated/deuterated
protonated glucose in D2O
-0.2
-0.1
+3.1
+3.3
+3.2
protonated/deuterated
protonated glucose in D2O
-0.2
+0.1
+3.2
+3.3
+3.4
protonated/deuterated
protonated glucose in D2O
-0.2
+0.0
+3.3
+3.4
+3.3
protonated/deuterated
deuterated glucose in D2O
+0.0
-0.0
+4.5
+4.6
+4.5
protonated/deuterated
deuterated glucose in D2O
-0.1
+0.0
+4.7
+4.8
+4.8
protonated/deuterated
deuterated glucose in D2O
-0.2
+0.1
+5.0
+5.1
+5.0
carbon source
D-Serine (C)
+0.0
+0.0
+8.2
+8.5
+8.5
carbon source
D-Serine (C)
+0.1
+0.1
+8.2
+8.6
+8.5
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