Fitness for 5 genes in Escherichia coli BW25113

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500 ntaroK and hofQ are separated by 400 nucleotideshofQ and yrfA overlap by 89 nucleotidesyrfA and yrfB overlap by 11 nucleotidesyrfB and yrfC overlap by 17 nucleotides b3390: aroK - shikimate kinase I (NCBI), at 3,516,565 to 3,517,086 aroK b3391: hofQ - predicted fimbrial transporter (NCBI), at 3,517,487 to 3,518,725 hofQ b3392: yrfA - orf, hypothetical protein (VIMSS), at 3,518,637 to 3,519,041 yrfA b3393: yrfB - hypothetical protein (NCBI), at 3,519,031 to 3,519,471 yrfB b3394: yrfC - predicted fimbrial assembly protein (NCBI), at 3,519,455 to 3,519,994 yrfC
Group Condition b3390 b3391 b3392 b3393 b3394
aroK hofQ yrfA yrfB yrfC
control PBS_cage_1_mouse_1_Cecum_40 hr -6.9 -0.4 -0.3 -0.5 +0.2
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM -1.6 -2.1 -1.5 -1.7 -0.9
carbon source Ying_AminoAcid20 rep A; time point 3 -6.6 +0.1 +0.1 +0.1 -0.2
carbon source Ying_OrganicAcid7 rep B; time point 2 -6.5 +0.1 +0.1 -0.0 -0.1
carbon source Ying_Nucleobase14 rep C; time point 3 -6.3 +0.1 +0.1 +0.1 -0.2
carbon source Ying_sugar7 rep C; time point 2 -6.5 +0.2 +0.2 -0.0 +0.0
carbon source Ying_OrganicAcid7 rep C; time point 2 -6.5 +0.1 +0.1 +0.1 +0.2
carbon source Ying_OrganicAcid7 rep A; time point 3 -6.4 +0.1 +0.2 +0.2 -0.1
carbon source carbon source D-Mannose 1mM -5.4 +0.1 -0.1 -0.7 +0.2
carbon source Ying_OrganicAcid7 rep C; time point 3 -6.3 +0.1 +0.1 +0.2 +0.3
carbon source Ying_sugar7 rep A; time point 3 -6.3 +0.3 +0.4 +0.2 -0.1
carbon source Ying_sugar7 rep B; time point 3 -6.4 +0.4 +0.3 +0.3 +0.1
carbon source Ying_sugar7 rep C; time point 3 -6.3 +0.3 +0.2 +0.4 +0.3
TN_15CS_warm37C_5dbl_rep3 -5.7 +0.2 +0.2 +0.2 +0.1
carbon source carbon source D-Glucose 0.5mM -5.7 +0.3 +0.3 +0.2 +0.1
carbon source carbon source D-Glucose 0.25mM -5.3 +0.2 +0.3 +0.4 -0.4
TN_15CS_warm37C_5dbl_rep1 -5.7 +0.2 +0.3 +0.4 +0.1
TN_15CS_15C_10dbl_rep2 -5.5 +0.2 +0.2 +0.4 +0.1
carbon source carbon source D-Mannose 20mM -5.7 +0.2 +0.4 +0.2 +0.3
stress LB Aerobic with Irgasan 0.0000003125 mM +5.7 -1.7 -1.7 -0.1 -0.7
phage T7_phage 0.00015625 MOI TC4 +4.5 -0.4 -0.3 -0.6 -0.7
stress Trimethoprim 0.00125 mM +5.6 -1.0 -0.9 -0.5 -0.2
stress Nickel (II) chloride 1.5 mM +4.9 -0.7 -0.3 -0.2 -0.2
stress Nickel (II) chloride 1.5 mM +5.0 -0.7 -0.3 -0.1 -0.4
phage phage +5.2 -0.4 -0.3 -0.6 -0.3
stress LB Aerobic with Novobiocin 0.0000625 mM +5.2 -0.8 -0.5 +0.1 -0.2
stress Cephalothin 0.01 mg/ml -2.1 +2.6 +2.2 +0.6 +0.5
stress Trimethoprim 0.0025 mM +6.3 -1.0 -0.6 -0.6 -0.0
stress Trimethoprim 0.005 mM +6.1 -0.1 -0.3 -0.5 -0.2
phage T7_phage 0.0015625 MOI TC2 +9.8 -0.0 -1.0 +0.2 +0.5
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