Fitness for 5 genes in Escherichia coli BW25113

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500 ntaroB and aroK are separated by 56 nucleotidesaroK and hofQ are separated by 400 nucleotideshofQ and yrfA overlap by 89 nucleotidesyrfA and yrfB overlap by 11 nucleotides b3389: aroB - 3-dehydroquinate synthase (NCBI), at 3,515,420 to 3,516,508 aroB b3390: aroK - shikimate kinase I (NCBI), at 3,516,565 to 3,517,086 aroK b3391: hofQ - predicted fimbrial transporter (NCBI), at 3,517,487 to 3,518,725 hofQ b3392: yrfA - orf, hypothetical protein (VIMSS), at 3,518,637 to 3,519,041 yrfA b3393: yrfB - hypothetical protein (NCBI), at 3,519,031 to 3,519,471 yrfB
Group Condition b3389 b3390 b3391 b3392 b3393
aroB aroK hofQ yrfA yrfB
carbon source Ying_OrganicAcid7 rep B; time point 2 -8.4 -6.5 +0.1 +0.1 -0.0
carbon source Ying_sugar7 rep C; time point 2 -8.3 -6.5 +0.2 +0.2 -0.0
carbon source Ying_Nucleobase14 rep C; time point 3 -8.1 -6.3 +0.1 +0.1 +0.1
carbon source Ying_OrganicAcid7 rep A; time point 3 -8.1 -6.4 +0.1 +0.2 +0.2
carbon source Ying_sugar7 rep B; time point 3 -8.3 -6.4 +0.4 +0.3 +0.3
carbon source Ying_OrganicAcid7 rep C; time point 3 -7.8 -6.3 +0.1 +0.1 +0.2
carbon source Ying_sugar7 rep A; time point 3 -8.3 -6.3 +0.3 +0.4 +0.2
carbon source Ying_sugar7 rep C; time point 3 -8.2 -6.3 +0.3 +0.2 +0.4
carbon source Ying_OrganicAcid7 rep C; time point 2 -7.0 -6.5 +0.1 +0.1 +0.1
carbon source carbon source D-Mannose 0.5mM -7.6 -5.6 +0.1 +0.0 -0.1
carbon source Ying_sugar7 rep B; time point 2 -8.5 -4.7 +0.2 +0.3 -0.0
carbon source Ying_OrganicAcid7 rep B; time point 3 -8.1 -4.9 +0.2 +0.2 +0.1
carbon source carbon source D-Mannose 1mM -6.6 -5.4 +0.1 -0.1 -0.7
carbon source Ying_Nucleobase14 rep B; time point 3 -8.1 -4.2 -0.1 +0.1 -0.2
carbon source carbon source D-Mannose 1mM -7.8 -5.2 +0.0 +0.2 +0.5
carbon source carbon source D-Glucose 1mM -6.9 -5.6 +0.3 +0.2 +0.2
carbon source Ying_sugar7 rep A; time point 2 -8.0 -4.3 +0.3 +0.3 -0.1
carbon source Ying_Nucleobase14 rep B; time point 2 -7.4 -4.1 -0.0 +0.1 -0.2
carbon source Ying_Nucleobase14 rep A; time point 3 -8.1 -3.6 -0.1 +0.2 +0.0
carbon source carbon source D-Mannose 0.5mM -7.1 -5.1 +0.2 -0.1 +0.6
carbon source carbon source D-Glucose 1mM -5.7 -5.7 +0.1 +0.3 -0.1
carbon source carbon source D-Glucose 0.25mM -6.6 -5.3 +0.2 +0.3 +0.4
carbon source carbon source D-Glucose 0.5mM -5.9 -5.7 +0.3 +0.3 +0.2
carbon source D-Galacturonic Acid (C) -6.1 -4.8 +0.1 +0.0 -0.0
carbon source D-Glucose-6-Phosphate (C) -5.7 -4.7 -0.0 +0.1 -0.4
carbon source D-Galacturonic Acid (C) -5.9 -4.7 +0.1 +0.2 -0.3
carbon source D-Glucose-6-Phosphate (C) -5.9 -4.8 +0.1 +0.0 +0.1
carbon source Glucose (C) -6.5 -3.9 +0.1 +0.2 -0.1
carbon source carbon source D-Mannose 20mM -5.1 -5.7 +0.2 +0.4 +0.2
phage T7_phage 0.0015625 MOI TC2 +1.6 +9.8 -0.0 -1.0 +0.2
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