Fitness for 5 genes in Escherichia coli BW25113

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500 ntfic and yhfG overlap by 11 nucleotidesyhfG and ppiA are separated by 104 nucleotidesppiA and tsgA are separated by 270 nucleotidestsgA and nirB are separated by 261 nucleotides b3361: fic - stationary-phase protein, cell division (NCBI), at 3,488,883 to 3,489,485 fic b3362: yhfG - hypothetical protein (NCBI), at 3,489,475 to 3,489,642 yhfG b3363: ppiA - peptidyl-prolyl cis-trans isomerase A (rotamase A) (NCBI), at 3,489,747 to 3,490,319 ppiA b3364: tsgA - hypothetical protein (NCBI), at 3,490,590 to 3,491,771 tsgA b3365: nirB - nitrite reductase, large subunit, NAD(P)H-binding (NCBI), at 3,492,033 to 3,494,576 nirB
Group Condition b3361 b3362 b3363 b3364 b3365
fic yhfG ppiA tsgA nirB
stress octanol 0.08 vol% -0.9 +0.4 -3.4 -0.4 -0.0
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM -0.7 -0.8 -0.8 -0.1 -0.9
stress Benzalkonium Chloride 0.004 mg/ml +0.0 +0.1 -3.1 +0.1 +0.2
stress Cephalothin 0.01 mg/ml -0.5 -0.1 -1.5 -0.1 -0.2
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM -0.7 -0.2 -1.2 -0.1 -0.0
stress Trimethoprim 0.0025 mM -0.1 -0.3 -1.4 +0.0 -0.1
stress Chlorite 0.4 mM -0.9 -0.0 -0.3 -0.2 -0.1
stress LB Anaerobic with Cephalothin 0.0000078125 mM -0.4 -0.3 -0.4 +0.1 -0.5
stress Carbenicillin 0.008 mg/ml -0.5 -0.2 -0.5 -0.1 -0.1
stress LB Anaerobic with Mecillinam 0.0000078125 mM -1.0 -0.3 +0.1 -0.1 -0.0
stress Trimethoprim 0.00125 mM +0.0 -0.4 -1.2 +0.1 +0.1
motility outer cut, LB soft agar motility assay -0.6 -0.9 -0.1 +0.7 -0.3
carbon source carbon source D-Mannose 0.5mM -0.8 -0.4 +0.2 -0.1 +0.2
phage T7_phage 0.0015625 MOI TC2 -1.2 +0.3 -0.0 -0.1 +0.1
predation 6 hr rep1_HD100_10fold_dilution_grewON -1.5 +0.1 -0.1 +0.1 +0.4
stress Ciprofloxacin Hydrochloride 0.0024 mM -1.1 +0.2 +0.1 -0.1 +0.0
motility outer cut, LB soft agar motility assay -1.1 -0.2 +0.2 +0.2 +0.0
stress LB Anaerobic with Irgasan 0.000000625 mM -0.2 -0.4 -0.6 -0.1 +0.6
stress LB Aerobic with Novobiocin 0.0000625 mM -0.3 +0.3 -0.8 +0.2 +0.0
stress LB Anaerobic with Chlorhexidine diacetate salt 0.000000625 mM +0.2 -0.2 -0.7 -0.1 +0.4
carbon source carbon source D-Glucose 5mM +0.2 -0.8 +0.3 +0.1 -0.2
phage Δdbn_10 -0.8 +0.4 +0.1 +0.1 -0.1
drt_type_3 DRT_type_3 +0.4 +0.3 -0.2 -0.2 -0.4
stress Chlorite 1.25 mM -0.9 -1.3 -1.0 +0.5 +2.6
stress LB Aerobic with Phenazine ethosulfate 0.0000625 mM +0.5 +0.2 -0.7 -0.1 -0.0
stress LB Anaerobic with Phenazine ethosulfate 0.000125 mM +0.2 +0.2 -0.4 -0.1 +0.7
phage T7_phage 0.00015625 MOI TC4 +0.3 -0.2 +0.5 +0.2 +0.3
gfp_control GFP_control +0.9 +0.4 -0.1 +0.0 -0.2
stress LB Anaerobic with Phenazine ethosulfate 0.000125 mM +0.5 +0.1 -0.3 +0.1 +0.6
stress 3-methyl-1-butanol 1.25 vol% +1.3 +0.0 +0.4 +0.3 +0.2
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