Fitness for 5 genes in Escherichia coli BW25113

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500 ntsstT and ygjV are separated by 4 nucleotidesygjV and uxaA are separated by 82 nucleotidesuxaA and uxaC are separated by 14 nucleotidesuxaC and exuT are separated by 362 nucleotides b3089: sstT - sodium:serine/threonine symporter (NCBI), at 3,237,966 to 3,239,210 sstT b3090: ygjV - conserved inner membrane protein (NCBI), at 3,239,215 to 3,239,766 ygjV b3091: uxaA - altronate hydrolase (NCBI), at 3,239,849 to 3,241,336 uxaA b3092: uxaC - glucuronate isomerase (NCBI), at 3,241,351 to 3,242,763 uxaC b3093: exuT - hexuronate transporter (NCBI), at 3,243,126 to 3,244,544 exuT
Group Condition b3089 b3090 b3091 b3092 b3093
sstT ygjV uxaA uxaC exuT
carbon source D-Galacturonic Acid (C) M9 -0.0 -0.1 -4.5 -4.3 -2.6
carbon source D-Galacturonic Acid (C) -0.0 -0.2 -5.0 -3.4 -1.1
carbon source D-Galacturonic Acid (C) -0.0 -0.1 -5.1 -3.1 -1.1
carbon source D-Galacturonic Acid (C) MOPS -0.0 -0.0 -4.5 -3.4 -1.5
carbon source D-Glucuronic Acid (C) +0.0 +0.0 -0.1 -1.7 -1.4
carbon source D-Glucuronic Acid (C) +0.0 -0.0 -0.1 -1.6 -1.2
carbon source D-Galacturonic Acid (C) MOPS -0.0 +0.1 -1.9 -0.9 -0.1
carbon source D-Galacturonic Acid (C) MOPS -0.1 +0.1 -1.9 -0.5 -0.2
nophagecontrol R1_N4_T1_phage0 -0.2 -0.5 -0.2 -0.0 -0.3
stress octanol 0.08 vol% +0.0 -0.4 -0.2 +0.1 -0.6
control PBS_cage_2_mouse_1_Cecum_40 hr -0.1 -0.6 -0.3 -0.2 +0.1
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM -0.1 -0.2 -0.1 -0.3 -0.3
stress Ciprofloxacin Hydrochloride 0.0003 mM -0.1 -0.3 -0.2 -0.1 -0.4
stress LB Aerobic with Irgasan 0.0000003125 mM +0.2 -0.5 -0.2 -0.1 -0.0
control PBS_cage_1_mice _Feces_40 hr +0.1 -0.7 -0.1 +0.2 -0.2
phage Δdbn_10 -0.3 -0.3 -0.3 +0.2 +0.2
control PBS_cage_1_mice _Feces_22 hr +0.1 -0.4 -0.1 +0.3 -0.1
phage Ste41 -0.5 -0.1 -0.0 -0.0 +0.6
motility inner cut, LB soft agar motility assay -0.2 -0.3 +0.2 +0.1 +0.2
phage R2_N4_T1_phage10 -0.2 +0.6 -0.2 -0.2 +0.0
control PBS_cage_1_mice _Feces_16 hr +0.3 -0.2 +0.1 +0.3 -0.2
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM +0.4 +0.0 -0.1 -0.4 +0.4
motility outer cut, LB soft agar motility assay +0.4 +0.1 -0.2 -0.1 +0.3
phage Phage_N4_cage_3_mouse_2_Cecum_40 hr +0.0 +0.3 -0.2 +0.1 +0.3
carbon source Acetate (C) +0.2 +0.1 -0.2 +0.4 +0.1
phage RB68 +0.2 -0.2 -0.1 -0.0 +1.0
phage RB68 +0.0 +0.1 -0.3 +0.1 +0.9
phage T7_phage 0.0015625 MOI TC1 +0.2 +0.0 +0.3 +0.4 +0.2
stress LB Anaerobic with Nitrofurantoin 0.00003125 mM +0.2 +0.6 -0.0 +0.2 +0.3
phage Ste41 +0.4 +0.2 +0.0 +0.5 +0.7
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