Fitness for 5 genes in Escherichia coli BW25113

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500 ntnudF and tolC are separated by 204 nucleotidestolC and ygiB are separated by 147 nucleotidesygiB and ygiC are separated by 5 nucleotidesygiC and ygiD are separated by 37 nucleotides b3034: nudF - ADP-ribose pyrophosphatase (NCBI), at 3,175,303 to 3,175,932 nudF b3035: tolC - outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS), at 3,176,137 to 3,177,618 tolC b3037: ygiB - conserved outer membrane protein (RefSeq), at 3,177,766 to 3,178,437 ygiB b3038: ygiC - predicted enzyme (NCBI), at 3,178,443 to 3,179,603 ygiC b3039: ygiD - predicted dioxygenase (RefSeq), at 3,179,641 to 3,180,429 ygiD
Group Condition b3034 b3035 b3037 b3038 b3039
nudF tolC ygiB ygiC ygiD
phage Phage_N4_cage_3_mouse_1_Cecum_40 hr +0.0 -9.1 -0.4 -0.3 +0.1
phage Phage_N4_cage_4_mouse_3_Cecum_40 hr -0.0 -9.2 -0.1 -0.2 -0.1
phage Phage_N4_cage_3_mouse_2_Cecum_40 hr -0.0 -9.0 -0.2 -0.2 -0.2
phage Phage_N4_cage_3_mice _Feces_40 hr +0.1 -9.4 -0.0 -0.4 +0.1
plasmid transformation mariner vector transformation; liquid outgrowth assay +0.5 +0.6 -4.3 -5.5 -0.8
control PBS_cage_2_mice _Feces_22 hr +0.1 -8.3 -0.6 -0.0 -0.5
phage Phage_N4_cage_4_mice _Feces_22 hr +0.2 -9.3 -0.0 -0.0 -0.2
phage Phage_N4_cage_4_mouse_2_Cecum_40 hr +0.1 -9.1 -0.0 -0.0 -0.2
control PBS_cage_2_mouse_1_Cecum_40 hr +0.1 -8.6 -0.2 -0.2 -0.3
control PBS_cage_2_mouse_2_Cecum_40 hr -0.2 -8.7 -0.2 -0.1 +0.0
phage Phage_N4_cage_3_mice _Feces_22 hr -0.3 -8.2 -0.3 -0.1 -0.1
control PBS_cage_1_mouse_2_Cecum_40 hr +0.3 -9.0 -0.3 -0.3 +0.5
phage Phage_N4_cage_4_mouse_1_Cecum_40 hr +0.0 -8.2 -0.2 -0.0 -0.3
control PBS_cage_2_mice _Feces_16 hr -0.3 -8.0 -0.2 +0.2 -0.3
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr +0.7 -8.7 -0.7 +0.1 -0.1
control PBS_cage_1_mice _Feces_40 hr +0.1 -8.6 -0.2 -0.3 +0.4
phage Phage_N4_cage_3_mice _Feces_16 hr -0.2 -8.2 -0.1 -0.1 +0.1
phage Phage_N4_cage_4_mice _Feces_40 hr +0.1 -8.1 -0.2 -0.1 -0.2
control PBS_cage_1_mice _Feces_16 hr +0.3 -8.3 -0.5 -0.6 +0.6
plasmid transformation mariner vector transformation; liquid outgrowth assay +0.3 +0.7 -3.6 -5.1 -0.8
control PBS_cage_1_mice _Feces_22 hr +0.2 -8.6 +0.1 -0.4 +0.4
control PBS_cage_2_mice _Feces_40 hr -0.1 -8.0 -0.3 +0.1 -0.1
phage Phage_N4_cage_3_mouse_4_Cecum_40 hr +0.1 -8.9 -0.3 +0.2 +0.6
phage Phage_N4_cage_4_mice _Feces_16 hr +0.1 -7.9 -0.1 +0.1 -0.3
control PBS_cage_2_mouse_3_Cecum_40 hr +0.0 -7.9 +0.2 +0.0 -0.4
plasmid transformation mariner vector transformation; liquid outgrowth assay +0.2 +0.2 -3.8 -3.7 -0.6
control PBS_cage_1_mouse_1_Cecum_40 hr +0.5 -8.6 +0.6 +0.0 -0.2
stress Tailocin 256 -0.0 -7.1 -0.2 +0.1 -0.2
plasmid transformation vcDART vector transformation; liquid outgrowth assay +0.3 +0.6 -3.0 -4.2 -0.4
plasmid transformation vcDART vector transformation; liquid outgrowth assay -0.2 +0.6 -3.4 -2.7 -0.8
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