Fitness for 5 genes in Escherichia coli BW25113

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 1179 experiments or choose conditions or try the comparative fitness browser

500 ntendA and yggJ are separated by 79 nucleotidesyggJ and gshB are separated by 12 nucleotidesgshB and yqgE are separated by 108 nucleotidesyqgE and yqgF overlap by 1 nucleotides b2945: endA - DNA-specific endonuclease I (NCBI), at 3,088,369 to 3,089,076 endA b2946: yggJ - orf, hypothetical protein (VIMSS), at 3,089,156 to 3,089,887 yggJ b2947: gshB - glutathione synthetase (NCBI), at 3,089,900 to 3,090,850 gshB b2948: yqgE - orf, hypothetical protein (VIMSS), at 3,090,959 to 3,091,522 yqgE b2949: yqgF - Holliday junction resolvase-like protein (NCBI), at 3,091,522 to 3,091,938 yqgF
Group Condition b2945 b2946 b2947 b2948 b2949
endA yggJ gshB yqgE yqgF
gfp_control GFP_control -9.7 -0.1 -2.2 -0.6 N.D.
mzaabcde mzaABCDE -9.5 +0.5 -1.7 -1.2 N.D.
gfp_control GFP_control -9.4 +0.3 -1.3 -1.0 N.D.
drt_type_3 DRT_type_3 -9.8 +0.4 -0.9 -0.5 N.D.
gfp_control GFP_control -9.4 -0.1 -0.3 -0.8 N.D.
drt_type_3 DRT_type_3 -9.6 +0.5 -0.8 -0.4 N.D.
sir2-hera SIR2-HerA -9.1 -0.0 -0.5 -0.6 N.D.
retron_ec_48_control retron_Ec_48_control -9.1 +0.5 -1.1 -0.4 N.D.
mzaabcde mzaABCDE -8.3 +0.2 -1.4 -0.5 N.D.
retron_ec_48_control retron_Ec_48_control -8.0 +0.3 -1.3 -0.7 N.D.
sir2-hera SIR2-HerA -7.8 +0.2 -1.1 -0.7 N.D.
retron_ec_48_control retron_Ec_48_control -8.0 +0.2 -0.7 -0.8 N.D.
ppi ppI -6.7 +0.2 -2.0 -0.7 N.D.
drt_type_3 DRT_type_3 -8.2 +0.3 -0.7 -0.6 N.D.
sir2-hera SIR2-HerA -8.0 +0.4 -0.3 -1.0 N.D.
mzaabcde mzaABCDE -6.7 +0.4 -1.0 -1.5 N.D.
ppi ppI -8.2 +0.1 -0.5 -0.3 N.D.
ppi ppI -6.9 +0.2 -1.3 -0.5 N.D.
stress LB Aerobic with Nitrofurantoin 0.00003125 mM -0.5 -0.4 -3.3 -2.4 N.D.
phage Ste41 -0.5 -1.3 -0.7 -3.8 N.D.
motility outer cut, LB soft agar motility assay +0.3 +0.4 -2.3 -4.0 N.D.
stress octanol 0.08 vol% -0.5 +1.2 +4.0 -1.9 N.D.
stress LB Aerobic with Phenazine ethosulfate 0.0000625 mM +0.3 +0.9 +4.2 -1.2 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM -0.3 -0.1 +5.5 +0.7 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.0 -0.4 +6.4 +0.1 N.D.
stress Trimethoprim 0.0025 mM -0.6 +1.2 +2.3 +3.4 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.0 -0.1 +6.6 +0.1 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.0 +0.2 +6.7 +0.6 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.1 -0.0 +7.1 +1.0 N.D.
stress Trimethoprim 0.005 mM -0.3 +0.5 +1.5 +6.1 N.D.
remove
b2945
plot		 remove
b2946
plot		 remove
b2947		 remove
b2948
plot		 remove
b2949
plot