Fitness for 5 genes in Escherichia coli BW25113

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500 ntyqgC and metK are separated by 303 nucleotidesmetK and galP are separated by 423 nucleotidesgalP and sprT are separated by 76 nucleotidessprT and endA are separated by 94 nucleotides b2940: yqgC - hypothetical protein (NCBI), at 3,084,209 to 3,084,424 yqgC b2942: metK - S-adenosylmethionine synthetase (NCBI), at 3,084,728 to 3,085,882 metK b2943: galP - galactose:H+ symporter (galP) (from data), at 3,086,306 to 3,087,700 galP b2944: sprT - hypothetical protein (NCBI), at 3,087,777 to 3,088,274 sprT b2945: endA - DNA-specific endonuclease I (NCBI), at 3,088,369 to 3,089,076 endA
Group Condition b2940 b2942 b2943 b2944 b2945
yqgC metK galP sprT endA
gfp_control GFP_control +1.0 N.D. -0.0 -0.1 -9.7
drt_type_3 DRT_type_3 +0.9 N.D. -0.0 +0.2 -9.8
sir2-hera SIR2-HerA +0.6 N.D. -0.0 +0.1 -9.1
mzaabcde mzaABCDE +0.8 N.D. -0.0 +0.2 -9.5
drt_type_3 DRT_type_3 +0.9 N.D. +0.1 +0.3 -9.6
gfp_control GFP_control +1.0 N.D. +0.0 +0.2 -9.4
gfp_control GFP_control +1.3 N.D. +0.0 +0.1 -9.4
retron_ec_48_control retron_Ec_48_control +0.8 N.D. +0.1 +0.5 -9.1
ppi ppI +0.6 N.D. -0.0 +0.1 -8.2
mzaabcde mzaABCDE +0.6 N.D. -0.0 +0.2 -8.3
drt_type_3 DRT_type_3 +0.7 N.D. -0.1 +0.1 -8.2
retron_ec_48_control retron_Ec_48_control +0.6 N.D. +0.0 +0.4 -8.0
retron_ec_48_control retron_Ec_48_control +0.9 N.D. -0.0 +0.3 -8.0
sir2-hera SIR2-HerA +1.0 N.D. -0.0 +0.2 -8.0
sir2-hera SIR2-HerA +0.8 N.D. -0.0 +0.2 -7.8
ppi ppI +0.5 N.D. -0.1 +0.2 -6.9
ppi ppI +1.1 N.D. -0.0 +0.2 -6.7
mzaabcde mzaABCDE +1.1 N.D. +0.1 +0.1 -6.7
carbon source D-Galactose (C) -0.1 N.D. -3.2 -0.3 +0.1
carbon source D-Galactose (C) -0.1 N.D. -2.6 -0.2 -0.2
carbon source carbon source D-Glucose 0.25mM -1.7 N.D. -0.1 -0.5 -0.5
plasmid transformation vcDART vector transformation; liquid outgrowth assay -1.1 N.D. -0.2 +0.1 -1.6
predation 6 hr rep1_HD100_10fold_dilution_grewON -2.5 N.D. +0.1 +0.1 +0.1
stress Cisplatin 0.1 mg/ml +0.2 N.D. -0.1 +0.0 -2.1
stress LB Aerobic with Nitrofurantoin 0.00003125 mM -1.4 N.D. +0.4 +0.3 -0.5
micoeukaryotes Tetrahymena sp., Mixed culture-1 -1.0 N.D. -0.0 -0.8 +0.7
stress Cisplatin 0.1 mg/ml -0.1 N.D. +0.4 +0.5 -1.7
stress LB Anaerobic with Nitrofurantoin 0.00003125 mM -1.6 N.D. +0.1 +0.4 +0.3
nitrogen source L-Arginine (N) -0.5 N.D. +0.0 +1.8 -0.2
stress Spectinomycin 0.0125 mg/ml +1.9 N.D. +0.1 -0.1 -0.7
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