Fitness for 5 genes in Escherichia coli BW25113

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500 ntrecD and recB overlap by 1 nucleotidesrecB and ptr overlap by 8 nucleotidesptr and recC are separated by 175 nucleotidesrecC and ppdC are separated by 12 nucleotides b2819: recD - exonuclease V (RecBCD complex), alpha chain (NCBI), at 2,948,657 to 2,950,483 recD b2820: recB - exonuclease V (RecBCD complex), beta subunit (NCBI), at 2,950,483 to 2,954,025 recB b2821: ptr - protease III (NCBI), at 2,954,018 to 2,956,906 ptr b2822: recC - exonuclease V (RecBCD complex), gamma chain (NCBI), at 2,957,082 to 2,960,450 recC b2823: ppdC - hypothetical protein (NCBI), at 2,960,463 to 2,960,786 ppdC
Group Condition b2819 b2820 b2821 b2822 b2823
recD recB ptr recC ppdC
retron_ec_48_control retron_Ec_48_control -9.7 -0.2 -0.3 -1.4 +0.5
retron_ec_48_control retron_Ec_48_control -9.7 -0.2 -0.4 -1.3 +0.7
drt_type_3 DRT_type_3 -9.9 -0.2 -0.3 -0.7 +0.4
retron_ec_48_control retron_Ec_48_control -8.6 -0.3 -0.6 -1.5 +0.5
phage P2 dilution 10-3 -6.7 -1.4 +0.1 -1.9 -0.1
drt_type_3 DRT_type_3 -9.4 -0.1 -0.3 -0.8 +0.7
drt_type_3 DRT_type_3 -8.9 -0.2 -0.4 -0.9 +0.6
ppi ppI -6.2 -0.2 -0.3 -0.7 +0.4
stress Nalidixic 0.006 mg/ml -0.2 -4.1 +0.1 -3.2 +0.4
motility inner cut, LB soft agar motility assay -0.4 -4.3 -0.1 -2.0 -0.1
stress 2-undecanol 5 vol% -0.3 -3.7 +0.0 -1.7 -0.3
phage P2 dilution 10-2 cacl2 -4.0 -0.7 +0.0 -1.3 -0.1
motility outer cut, LB soft agar motility assay -0.1 -3.6 +0.2 -2.2 -0.1
ppi ppI -5.1 -0.3 -0.3 -0.7 +0.6
stress Cisplatin 0.05 mg/ml -1.7 -2.1 -0.4 -1.7 +0.2
ppi ppI -5.3 -0.2 -0.3 -0.5 +0.8
phage P2 dilution 10-3 cacl2 -3.5 -0.7 -0.1 -1.4 +0.2
stress hexanol 0.31 vol% -0.2 -3.8 +0.3 -1.7 -0.0
phage Phage_N4_cage_4_mouse_1_Cecum_40 hr -0.5 -3.1 -0.0 -2.2 +0.3
sir2-hera SIR2-HerA -4.4 -0.4 -0.3 -0.5 +0.3
phage Phage_N4_cage_3_mice _Feces_22 hr -0.1 -3.2 -0.0 -2.2 +0.4
control PBS_cage_2_mice _Feces_40 hr +0.3 -2.7 +0.2 -2.4 -0.5
control PBS_cage_1_mice _Feces_22 hr -0.6 -2.4 +0.1 -2.4 +0.5
control PBS_cage_2_mouse_1_Cecum_40 hr +0.4 -2.5 +0.3 -1.9 -1.0
sir2-hera SIR2-HerA -4.5 -0.1 -0.2 -0.3 +0.7
control PBS_cage_1_mice _Feces_40 hr -0.5 -2.5 +0.1 -2.4 +0.7
phage T7_phage 0.00015625 MOI TC4 +0.1 +2.9 +0.1 +2.6 -1.2
plasmid transformation vcDART vector transformation; liquid outgrowth assay +3.7 +1.2 -0.1 +0.6 +0.7
phage T7_phage 0.00015625 MOI TC3 +1.8 +5.5 -0.1 +4.7 +0.0
phage T7_phage 0.0015625 MOI TC2 +1.1 +5.8 +0.1 +4.9 +0.0
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