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Protein
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Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
sdaB and ygdG are separated by 111 nucleotides
ygdG and fucO are separated by 54 nucleotides
fucO and fucA are separated by 27 nucleotides
fucA and fucP are separated by 546 nucleotides
b2797: sdaB - L-serine deaminase II (NCBI), at 2,927,598 to 2,928,965
sdaB
b2798: ygdG - Ssb-binding protein, misidentified as ExoIX (RefSeq), at 2,929,077 to 2,929,832
ygdG
b2799: fucO - L-1,2-propanediol oxidoreductase (NCBI), at 2,929,887 to 2,931,035
fucO
b2800: fucA - L-fuculose phosphate aldolase (NCBI), at 2,931,063 to 2,931,710
fucA
b2801: fucP - L-fucose transporter (NCBI), at 2,932,257 to 2,933,573
fucP
Group
Condition
b2797
b2798
b2799
b2800
b2801
sdaB
ygdG
fucO
fucA
fucP
carbon source
L-Fucose (C)
+0.3
-0.3
-1.9
-4.1
-1.3
carbon source
L-Fucose (C)
+0.2
-0.0
-1.9
-4.1
-1.0
control
PBS_cage_2_mouse_1_Cecum_40 hr
-0.6
-0.8
-0.1
-1.2
+0.1
stress
LB Aerobic with Ramoplanin 0.000125 mM
-0.4
-0.7
+0.1
-0.5
-0.6
stress
LB Anaerobic with Benzethonium chloride 0.00003125 mM
-1.0
-0.9
-0.1
-0.1
-0.0
control
PBS_cage_2_mice _Feces_40 hr
-0.3
-0.5
+0.3
-1.3
-0.1
phage
Phage_N4_cage_4_mice _Feces_40 hr
-0.1
-0.5
+0.1
-1.5
+0.1
phage
Lambda_ci1857
-1.5
-0.4
+0.1
+0.1
-0.2
control
PBS_cage_2_mouse_2_Cecum_40 hr
-0.3
-0.4
-0.2
-0.8
+0.0
plasmid transformation
vcDART vector transformation; liquid outgrowth assay
-0.1
-0.0
+0.1
-1.0
-0.6
control
PBS_cage_2_mice _Feces_22 hr
-0.4
-0.5
+0.1
-0.8
-0.1
phage
Phage_N4_cage_3_mouse_1_Cecum_40 hr
-0.5
+0.3
-0.1
-1.2
+0.1
phage
T7_phage 0.0015625 MOI TC2
+0.0
-0.4
-0.9
+0.3
-0.2
stress
Aluminum chloride 5 mM
-1.0
+0.6
+0.0
-0.3
-0.2
predation
6 hr rep2_HD100_10fold_dilution_grewON
-0.1
-0.6
-0.4
+0.5
-0.2
control
PBS_cage_1_mice _Feces_40 hr
-0.0
+0.6
+0.4
-1.7
-0.0
stress
Cisplatin 0.1 mg/ml
-0.9
+0.5
+0.3
-0.1
-0.4
stress
LB Anaerobic with Cephalothin 0.0000078125 mM
-1.1
+0.3
+0.2
-0.3
+0.1
control
PBS_cage_1_mouse_2_Cecum_40 hr
-0.1
+0.3
+0.4
-0.9
-0.3
gfp_control
GFP_control
+0.8
-0.4
-0.4
-0.3
+0.0
drt_type_3
DRT_type_3
+0.8
-0.4
-0.1
-0.5
+0.1
mzaabcde
mzaABCDE
+0.9
-0.3
-0.3
-0.3
+0.2
sir2-hera
SIR2-HerA
+1.0
-0.3
-0.2
-0.4
-0.0
sir2-hera
SIR2-HerA
+0.9
-0.4
-0.2
-0.3
+0.2
phage
Ste41
+0.3
+0.3
+0.4
+0.2
-0.7
mzaabcde
mzaABCDE
+0.9
-0.1
-0.4
-0.3
+0.2
phage
Ste41
+0.7
+0.6
-0.5
-0.0
-0.2
control
PBS_cage_1_mice _Feces_22 hr
+0.2
+0.9
+0.4
-1.0
+0.0
control
PBS_cage_1_mice _Feces_16 hr
+0.2
+0.9
+0.6
-1.1
+0.1
phage
TP4
+0.3
+0.3
+0.3
-0.5
+0.5
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