Fitness for 5 genes in Escherichia coli BW25113

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500 ntygdH and sdaC are separated by 556 nucleotidessdaC and sdaB are separated by 57 nucleotidessdaB and ygdG are separated by 111 nucleotidesygdG and fucO are separated by 54 nucleotides b2795: ygdH - hypothetical protein (NCBI), at 2,924,330 to 2,925,694 ygdH b2796: sdaC - predicted serine transporter (NCBI), at 2,926,251 to 2,927,540 sdaC b2797: sdaB - L-serine deaminase II (NCBI), at 2,927,598 to 2,928,965 sdaB b2798: ygdG - Ssb-binding protein, misidentified as ExoIX (RefSeq), at 2,929,077 to 2,929,832 ygdG b2799: fucO - L-1,2-propanediol oxidoreductase (NCBI), at 2,929,887 to 2,931,035 fucO
Group Condition b2795 b2796 b2797 b2798 b2799
ygdH sdaC sdaB ygdG fucO
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM -0.3 -2.6 -0.6 -0.0 -0.0
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM +0.5 -2.9 -0.7 +0.1 -0.6
phage Lambda_ci1857 +0.3 -2.0 -1.5 -0.4 +0.1
plasmid transformation mariner vector transformation; liquid outgrowth assay +0.1 -2.8 -0.3 -0.0 -0.0
plasmid transformation mariner vector transformation; liquid outgrowth assay +0.5 -3.1 -0.2 +0.3 -0.4
stress Cisplatin 0.1 mg/ml -0.2 -2.0 -0.9 +0.5 +0.3
stress Spectinomycin 0.0125 mg/ml +0.0 -1.8 -0.9 +0.5 -0.1
stress 1-ethyl-3-methylimidazolium chloride 40 mM +0.2 -2.1 -0.5 +0.2 -0.1
stress Benzalkonium Chloride 0.004 mg/ml -0.1 -2.0 -0.1 +0.5 -0.4
stress LB Aerobic with Hygromycin B 0.000015625 mM +0.0 -2.0 -0.4 +0.3 +0.0
carbon source L-Fucose (C) -0.1 +0.1 +0.3 -0.3 -1.9
stress LB Aerobic with Hygromycin B 0.000015625 mM -0.1 -2.0 -0.4 +0.5 +0.2
stress 2-Furfuraldehyde 0.25 vol% +0.0 -2.4 +0.1 +0.6 +0.1
stress 2-nitrobenzenesulfonyl fluoride +0.3 -2.1 +0.0 +0.2 -0.0
stress Spectinomycin 0.00625 mg/ml +0.1 -1.5 -0.5 +0.3 +0.1
carbon source L-Fucose (C) -0.0 +0.3 +0.2 -0.0 -1.9
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM -0.4 +1.3 -1.0 -0.9 -0.1
phage Ste41 +0.2 -0.6 +0.7 +0.6 -0.5
mzaabcde mzaABCDE -0.4 +0.7 +0.9 -0.1 -0.4
mzaabcde mzaABCDE -0.3 +0.7 +0.9 -0.3 -0.3
sir2-hera SIR2-HerA -0.3 +0.9 +0.9 -0.4 -0.2
gfp_control GFP_control -0.4 +1.2 +0.8 -0.4 -0.4
drt_type_3 DRT_type_3 -0.4 +1.0 +0.8 -0.4 -0.1
gfp_control GFP_control -0.4 +0.9 +0.8 -0.3 -0.1
sir2-hera SIR2-HerA -0.4 +1.0 +1.0 -0.3 -0.2
drt_type_3 DRT_type_3 -0.4 +0.9 +0.9 -0.2 -0.1
gfp_control GFP_control -0.3 +1.1 +0.8 -0.4 -0.0
retron_ec_48_control retron_Ec_48_control -0.5 +1.3 +1.1 -0.3 -0.1
retron_ec_48_control retron_Ec_48_control -0.4 +1.2 +0.9 -0.1 -0.1
stress LB Aerobic with Irgasan 0.0000003125 mM -0.2 +2.7 -0.2 +0.7 +0.1
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