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Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
ygdH and sdaC are separated by 556 nucleotides
sdaC and sdaB are separated by 57 nucleotides
sdaB and ygdG are separated by 111 nucleotides
ygdG and fucO are separated by 54 nucleotides
b2795: ygdH - hypothetical protein (NCBI), at 2,924,330 to 2,925,694
ygdH
b2796: sdaC - predicted serine transporter (NCBI), at 2,926,251 to 2,927,540
sdaC
b2797: sdaB - L-serine deaminase II (NCBI), at 2,927,598 to 2,928,965
sdaB
b2798: ygdG - Ssb-binding protein, misidentified as ExoIX (RefSeq), at 2,929,077 to 2,929,832
ygdG
b2799: fucO - L-1,2-propanediol oxidoreductase (NCBI), at 2,929,887 to 2,931,035
fucO
Group
Condition
b2795
b2796
b2797
b2798
b2799
ygdH
sdaC
sdaB
ygdG
fucO
stress
LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM
-0.3
-2.6
-0.6
-0.0
-0.0
stress
LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM
+0.5
-2.9
-0.7
+0.1
-0.6
phage
Lambda_ci1857
+0.3
-2.0
-1.5
-0.4
+0.1
plasmid transformation
mariner vector transformation; liquid outgrowth assay
+0.1
-2.8
-0.3
-0.0
-0.0
plasmid transformation
mariner vector transformation; liquid outgrowth assay
+0.5
-3.1
-0.2
+0.3
-0.4
stress
Cisplatin 0.1 mg/ml
-0.2
-2.0
-0.9
+0.5
+0.3
stress
Spectinomycin 0.0125 mg/ml
+0.0
-1.8
-0.9
+0.5
-0.1
stress
1-ethyl-3-methylimidazolium chloride 40 mM
+0.2
-2.1
-0.5
+0.2
-0.1
stress
Benzalkonium Chloride 0.004 mg/ml
-0.1
-2.0
-0.1
+0.5
-0.4
stress
LB Aerobic with Hygromycin B 0.000015625 mM
+0.0
-2.0
-0.4
+0.3
+0.0
carbon source
L-Fucose (C)
-0.1
+0.1
+0.3
-0.3
-1.9
stress
LB Aerobic with Hygromycin B 0.000015625 mM
-0.1
-2.0
-0.4
+0.5
+0.2
stress
2-Furfuraldehyde 0.25 vol%
+0.0
-2.4
+0.1
+0.6
+0.1
stress
2-nitrobenzenesulfonyl fluoride
+0.3
-2.1
+0.0
+0.2
-0.0
stress
Spectinomycin 0.00625 mg/ml
+0.1
-1.5
-0.5
+0.3
+0.1
carbon source
L-Fucose (C)
-0.0
+0.3
+0.2
-0.0
-1.9
stress
LB Anaerobic with Benzethonium chloride 0.00003125 mM
-0.4
+1.3
-1.0
-0.9
-0.1
phage
Ste41
+0.2
-0.6
+0.7
+0.6
-0.5
mzaabcde
mzaABCDE
-0.4
+0.7
+0.9
-0.1
-0.4
mzaabcde
mzaABCDE
-0.3
+0.7
+0.9
-0.3
-0.3
sir2-hera
SIR2-HerA
-0.3
+0.9
+0.9
-0.4
-0.2
gfp_control
GFP_control
-0.4
+1.2
+0.8
-0.4
-0.4
drt_type_3
DRT_type_3
-0.4
+1.0
+0.8
-0.4
-0.1
gfp_control
GFP_control
-0.4
+0.9
+0.8
-0.3
-0.1
sir2-hera
SIR2-HerA
-0.4
+1.0
+1.0
-0.3
-0.2
drt_type_3
DRT_type_3
-0.4
+0.9
+0.9
-0.2
-0.1
gfp_control
GFP_control
-0.3
+1.1
+0.8
-0.4
-0.0
retron_ec_48_control
retron_Ec_48_control
-0.5
+1.3
+1.1
-0.3
-0.1
retron_ec_48_control
retron_Ec_48_control
-0.4
+1.2
+0.9
-0.1
-0.1
stress
LB Aerobic with Irgasan 0.0000003125 mM
-0.2
+2.7
-0.2
+0.7
+0.1
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