Fitness for 5 genes in Escherichia coli BW25113

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500 ntsokX and cysH are separated by 168 nucleotidescysH and cysI are separated by 74 nucleotidescysI and cysJ overlap by 1 nucleotidescysJ and ygcM are separated by 315 nucleotides b4701: sokX - sok-related sRNA, function unknown (RefSeq), at 2,885,376 to 2,885,431 sokX b2762: cysH - phosphoadenosine phosphosulfate reductase (NCBI), at 2,885,600 to 2,886,334 cysH b2763: cysI - sulfite reductase, beta subunit, NAD(P)-binding, heme-binding (NCBI), at 2,886,409 to 2,888,121 cysI b2764: cysJ - sulfite reductase, alpha subunit, flavoprotein (NCBI), at 2,888,121 to 2,889,920 cysJ b2765: ygcM - 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) (NCBI), at 2,890,236 to 2,890,601 ygcM
Group Condition b4701 b2762 b2763 b2764 b2765
sokX cysH cysI cysJ ygcM
carbon source Ying_sugar7 rep C; time point 3 -0.3 -7.7 -8.0 -8.3 +0.3
carbon source Ying_sugar7 rep B; time point 2 -0.2 -8.0 -7.4 -8.4 -0.0
carbon source Ying_sugar7 rep A; time point 3 +0.3 -7.9 -8.1 -8.4 +0.3
carbon source Ying_sugar7 rep B; time point 3 +0.5 -7.9 -8.1 -8.3 +0.2
carbon source Ying_sugar7 rep A; time point 2 +0.3 -8.0 -7.5 -7.8 +0.0
carbon source Ying_sugar7 rep C; time point 2 +0.3 -8.0 -8.1 -7.3 +0.2
carbon source Ying_Nucleobase14 rep B; time point 3 -1.2 -7.1 -6.0 -7.8 +0.1
carbon source Ying_Nucleobase14 rep C; time point 3 +0.3 -7.5 -7.3 -6.7 +0.2
carbon source Ying_OrganicAcid7 rep A; time point 3 -0.5 -7.9 -6.0 -6.4 +0.1
carbon source carbon source D-Mannose 0.5mM +1.7 -7.2 -7.1 -4.7 -1.6
carbon source Ying_Nucleobase14 rep A; time point 3 +1.4 -7.4 -6.3 -6.6 +0.0
carbon source carbon source D-Glucose 0.25mM -2.4 -5.4 -4.5 -5.2 -0.5
carbon source carbon source D-Glucose 1mM -2.6 -4.7 -5.7 -5.1 -0.0
carbon source carbon source D-Mannose 1mM -2.4 -6.6 -5.4 -4.1 +1.2
carbon source Ying_Nucleobase14 rep A; time point 2 -0.1 -5.9 -5.2 -5.8 +0.1
carbon source Ying_OrganicAcid7 rep B; time point 3 +0.4 -6.9 -5.4 -5.0 +0.1
carbon source Ying_Nucleobase14 rep B; time point 2 +0.4 -6.9 -5.3 -5.3 +0.4
carbon source Glucose (C) -0.2 -6.4 -4.8 -5.2 -0.0
carbon source carbon source D-Mannose 20mM -2.5 -5.0 -4.0 -4.9 -0.2
carbon source Ying_Nucleobase14 rep C; time point 2 -0.2 -5.8 -5.1 -5.6 +0.1
carbon source Ying_OrganicAcid7 rep C; time point 3 +1.1 -6.6 -4.9 -5.9 +0.3
carbon source carbon source D-Glucose 0.5mM -0.7 -6.2 -4.6 -4.4 +0.3
carbon source Glucose (C) -0.2 -5.7 -4.4 -5.1 +0.1
carbon source carbon source D-Glucose 0.5mM +1.3 -5.3 -4.6 -6.3 -0.1
carbon source carbon source D-Glucose 5mM -2.2 -4.9 -3.7 -3.9 +0.2
carbon source D-Glucose-6-Phosphate (C) +0.0 -5.2 -4.6 -5.0 +0.2
carbon source carbon source D-Glucose 0.25mM +0.8 -4.5 -5.8 -4.9 -0.0
carbon source LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C) +0.4 -5.0 -5.4 -4.4 +0.2
carbon source Ying_sugar7 rep B; time point 1 +1.1 -4.5 -4.9 -4.4 +0.0
carbon source carbon source D-Mannose 0.5mM +1.3 -4.4 -6.6 -3.6 +1.0
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