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Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
ygaH and mprA are separated by 90 nucleotides
mprA and emrA are separated by 126 nucleotides
emrA and emrB are separated by 16 nucleotides
emrB and luxS are separated by 63 nucleotides
b2683: ygaH - predicted inner membrane protein (NCBI), at 2,808,366 to 2,808,701
ygaH
b2684: mprA - DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI), at 2,808,792 to 2,809,322
mprA
b2685: emrA - multidrug efflux system (NCBI), at 2,809,449 to 2,810,621
emrA
b2686: emrB - multidrug efflux system protein (NCBI), at 2,810,638 to 2,812,176
emrB
b2687: luxS - S-ribosylhomocysteinase (NCBI), at 2,812,240 to 2,812,755
luxS
Group
Condition
b2683
b2684
b2685
b2686
b2687
ygaH
mprA
emrA
emrB
luxS
stress
2,4-Dinitrophenol 2 mM
-0.6
+1.5
-4.7
-5.5
-0.3
stress
2,4-Dinitrophenol 2 mM
-0.5
+1.7
-3.7
-4.1
-0.3
stress
2,4-Dinitrophenol 1 mM
-0.3
+1.8
-3.4
-3.5
-0.0
stress
2,4-Dinitrophenol 1 mM
-0.1
+1.7
-3.0
-3.0
-0.2
carbon source
Glycolic Acid (C)
-0.5
-3.0
+0.6
+0.8
-0.9
carbon source
Glycolic Acid (C)
-0.8
-2.4
+0.6
+0.9
-0.9
stress
M9 with Methotrexate 1.98 mM 24 hr
+0.0
+2.7
-1.9
-2.2
-0.1
stress
M9 with Methotrexate 1.98 mM 24 hr
+0.4
+3.8
-2.6
-2.9
-0.0
stress
M9 with Methotrexate 1.98 mM 48 hr
-0.1
+2.8
-1.8
-2.2
+0.1
stress
M9 with Methotrexate 1.98 mM 48 hr
+0.1
+4.2
-2.9
-2.4
-0.0
supernatant
RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
+0.3
+3.2
-1.1
-1.2
+0.1
supernatant
RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
+0.2
+3.2
-0.8
-0.9
+0.0
stress
M9 with Methotrexate 1.98 mM 24 hr
+1.1
+6.2
-2.6
-2.9
-0.1
stress
Ciprofloxacin Hydrochloride 0.0024 mM
-0.9
+4.3
-1.1
-0.3
-0.2
stress
LB Anaerobic with 8-hydroxy-nitroquinoline 0.0000025 mM
+1.5
+2.1
-0.5
-0.7
-0.2
supernatant
RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
+0.2
+4.6
-1.1
-1.2
-0.1
supernatant
RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
+0.1
+4.4
-1.1
-0.7
+0.0
stress
octanol 0.08 vol%
-0.7
+4.1
+0.2
-0.5
-0.2
phage
N4_phage 0.00009375 MOI TC4
+4.1
-0.3
+0.2
-0.2
-0.3
stress
Trimethoprim 0.0025 mM
-0.7
+3.3
+0.5
+0.5
+0.1
stress
LB Aerobic with Novobiocin 0.0000625 mM
-0.7
+3.5
+0.7
+0.6
-0.2
phage
N4_phage 0.009375 MOI TC2
+4.6
-0.2
+0.1
+0.2
-0.2
stress
LB Aerobic with Novobiocin 0.0000625 mM
-0.2
+4.5
+0.8
+0.9
-0.1
stress
Nalidixic 0.006 mg/ml
+2.5
+6.8
-1.8
-1.5
+0.0
stress
Benzalkonium Chloride 0.004 mg/ml
+0.3
+3.1
+1.6
+1.1
+0.2
stress
LB Anaerobic with Nalidixic 0.0000078125 mM
+1.7
+5.5
-0.3
-0.3
-0.1
stress
LB Anaerobic with Nalidixic 0.0000078125 mM
+1.6
+6.1
-0.3
-0.4
-0.5
stress
Nalidixic 0.0313 mM
+1.3
+6.5
-0.4
-0.4
-0.0
stress
Nalidixic 0.06 mM
+1.3
+7.7
-0.9
-1.0
-0.1
stress
Nalidixic 0.06 mM
+1.6
+8.6
-0.7
-0.7
-0.2
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