Fitness for 5 genes in Escherichia coli BW25113

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500 ntygaH and mprA are separated by 90 nucleotidesmprA and emrA are separated by 126 nucleotidesemrA and emrB are separated by 16 nucleotidesemrB and luxS are separated by 63 nucleotides b2683: ygaH - predicted inner membrane protein (NCBI), at 2,808,366 to 2,808,701 ygaH b2684: mprA - DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI), at 2,808,792 to 2,809,322 mprA b2685: emrA - multidrug efflux system (NCBI), at 2,809,449 to 2,810,621 emrA b2686: emrB - multidrug efflux system protein (NCBI), at 2,810,638 to 2,812,176 emrB b2687: luxS - S-ribosylhomocysteinase (NCBI), at 2,812,240 to 2,812,755 luxS
Group Condition b2683 b2684 b2685 b2686 b2687
ygaH mprA emrA emrB luxS
stress 2,4-Dinitrophenol 2 mM -0.6 +1.5 -4.7 -5.5 -0.3
stress 2,4-Dinitrophenol 2 mM -0.5 +1.7 -3.7 -4.1 -0.3
stress 2,4-Dinitrophenol 1 mM -0.3 +1.8 -3.4 -3.5 -0.0
stress 2,4-Dinitrophenol 1 mM -0.1 +1.7 -3.0 -3.0 -0.2
carbon source Glycolic Acid (C) -0.5 -3.0 +0.6 +0.8 -0.9
carbon source Glycolic Acid (C) -0.8 -2.4 +0.6 +0.9 -0.9
stress M9 with Methotrexate 1.98 mM 24 hr +0.0 +2.7 -1.9 -2.2 -0.1
stress M9 with Methotrexate 1.98 mM 24 hr +0.4 +3.8 -2.6 -2.9 -0.0
stress M9 with Methotrexate 1.98 mM 48 hr -0.1 +2.8 -1.8 -2.2 +0.1
stress M9 with Methotrexate 1.98 mM 48 hr +0.1 +4.2 -2.9 -2.4 -0.0
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x +0.3 +3.2 -1.1 -1.2 +0.1
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x +0.2 +3.2 -0.8 -0.9 +0.0
stress M9 with Methotrexate 1.98 mM 24 hr +1.1 +6.2 -2.6 -2.9 -0.1
stress Ciprofloxacin Hydrochloride 0.0024 mM -0.9 +4.3 -1.1 -0.3 -0.2
stress LB Anaerobic with 8-hydroxy-nitroquinoline 0.0000025 mM +1.5 +2.1 -0.5 -0.7 -0.2
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.2 +4.6 -1.1 -1.2 -0.1
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.1 +4.4 -1.1 -0.7 +0.0
stress octanol 0.08 vol% -0.7 +4.1 +0.2 -0.5 -0.2
phage N4_phage 0.00009375 MOI TC4 +4.1 -0.3 +0.2 -0.2 -0.3
stress Trimethoprim 0.0025 mM -0.7 +3.3 +0.5 +0.5 +0.1
stress LB Aerobic with Novobiocin 0.0000625 mM -0.7 +3.5 +0.7 +0.6 -0.2
phage N4_phage 0.009375 MOI TC2 +4.6 -0.2 +0.1 +0.2 -0.2
stress LB Aerobic with Novobiocin 0.0000625 mM -0.2 +4.5 +0.8 +0.9 -0.1
stress Nalidixic 0.006 mg/ml +2.5 +6.8 -1.8 -1.5 +0.0
stress Benzalkonium Chloride 0.004 mg/ml +0.3 +3.1 +1.6 +1.1 +0.2
stress LB Anaerobic with Nalidixic 0.0000078125 mM +1.7 +5.5 -0.3 -0.3 -0.1
stress LB Anaerobic with Nalidixic 0.0000078125 mM +1.6 +6.1 -0.3 -0.4 -0.5
stress Nalidixic 0.0313 mM +1.3 +6.5 -0.4 -0.4 -0.0
stress Nalidixic 0.06 mM +1.3 +7.7 -0.9 -1.0 -0.1
stress Nalidixic 0.06 mM +1.6 +8.6 -0.7 -0.7 -0.2
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