Fitness for 5 genes in Escherichia coli BW25113

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500 ntglmY and purL are separated by 315 nucleotidespurL and mltF are separated by 257 nucleotidesmltF and tadA overlap by 4 nucleotidestadA and yfhB are separated by 57 nucleotides b4441: glmY - sRNA activator of glmS mRNA (RefSeq), at 2,689,179 to 2,689,362 glmY b2557: purL - phosphoribosylformylglycinamidine synthase (NCBI), at 2,689,678 to 2,693,565 purL b2558: mltF - predicted periplasmic binding protein/transglycosylase (RefSeq), at 2,693,823 to 2,695,379 mltF b2559: tadA - tRNA-specific adenosine deaminase (RefSeq), at 2,695,376 to 2,695,879 tadA b2560: yfhB - orf, hypothetical protein (VIMSS), at 2,695,937 to 2,696,572 yfhB
Group Condition b4441 b2557 b2558 b2559 b2560
glmY purL mltF tadA yfhB
carbon source Ying_OrganicAcid7 rep B; time point 3 -0.7 -8.0 -0.0 N.D. +0.0
carbon source Ying_sugar7 rep A; time point 3 -0.4 -8.0 +0.1 N.D. +0.0
carbon source Ying_OrganicAcid7 rep C; time point 3 -0.6 -7.8 -0.0 N.D. +0.1
carbon source carbon source D-Mannose 0.5mM -1.9 -6.9 +0.1 N.D. +0.3
carbon source Ying_AminoAcid20 rep C; time point 3 -0.3 -7.9 +0.0 N.D. +0.1
carbon source Ying_sugar7 rep B; time point 3 -0.2 -8.1 -0.0 N.D. +0.2
msc 22hr_MSC_rep1_lowinoculum -0.2 -7.9 +0.0 N.D. +0.1
carbon source Ying_OrganicAcid7 rep A; time point 3 -0.2 -7.8 +0.0 N.D. +0.1
carbon source Ying_AminoAcid20 rep A; time point 3 +0.1 -8.0 -0.1 N.D. +0.1
carbon source Ying_sugar7 rep A; time point 2 +0.1 -8.0 +0.1 N.D. +0.0
carbon source Ying_AminoAcid20 rep B; time point 3 +0.0 -7.9 +0.1 N.D. +0.0
carbon source Ying_sugar7 rep B; time point 2 -0.3 -7.8 +0.2 N.D. +0.1
carbon source Ying_sugar7 rep C; time point 3 -0.2 -7.9 -0.0 N.D. +0.4
msc 6hr_MSC_rep1_lowinoculum -0.1 -7.7 -0.0 N.D. -0.0
carbon source Ying_sugar7 rep C; time point 2 +0.3 -8.2 +0.1 N.D. +0.2
msc 22hr_MSC_rep2_lowinoculum +0.0 -7.5 +0.2 N.D. -0.1
carbon source Ying_OrganicAcid7 rep A; time point 2 -0.3 -7.1 +0.2 N.D. +0.0
carbon source Ying_AminoAcid20 rep C; time point 2 +0.3 -7.2 +0.0 N.D. +0.0
carbon source Ying_AminoAcid20 rep A; time point 2 +0.2 -7.3 +0.1 N.D. +0.3
carbon source Ying_AminoAcid20 rep B; time point 2 +0.5 -7.3 +0.1 N.D. -0.0
msc 6hr_MSC_rep2_lowinoculum +0.5 -6.8 +0.1 N.D. -0.1
carbon source Sodium-DL-Lactate +0.1 -6.5 -0.2 N.D. +0.3
carbon source Ying_OrganicAcid7 rep B; time point 2 +0.3 -6.7 +0.1 N.D. +0.1
carbon source Casamino-acids +0.4 -6.5 -0.0 N.D. +0.2
carbon source Casamino-acids +0.6 -6.3 -0.1 N.D. -0.1
carbon source Glucose (C) +0.5 -6.1 +0.0 N.D. -0.2
carbon source carbon source D-Glucose 0.5mM +0.8 -6.0 -0.0 N.D. -0.1
carbon source carbon source D-Glucose 1mM +0.8 -6.2 +0.1 N.D. +0.2
carbon source carbon source D-Mannose 5mM +1.2 -5.4 -0.5 N.D. -0.2
carbon source carbon source D-Mannose 1mM +1.5 -6.0 +0.0 N.D. +0.3
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