Fitness for 5 genes in Escherichia coli BW25113

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500 ntyfhA and yfhG overlap by 11 nucleotidesyfhG and yfhK are separated by 164 nucleotidesyfhK and glmY are separated by 58 nucleotidesglmY and purL are separated by 315 nucleotides b2554: yfhA - predicted DNA-binding response regulator in two-component system (NCBI), at 2,685,491 to 2,686,825 yfhA b2555: yfhG - hypothetical protein (NCBI), at 2,686,815 to 2,687,528 yfhG b2556: yfhK - putative 2-component sensor protein (VIMSS), at 2,687,693 to 2,689,120 yfhK b4441: glmY - sRNA activator of glmS mRNA (RefSeq), at 2,689,179 to 2,689,362 glmY b2557: purL - phosphoribosylformylglycinamidine synthase (NCBI), at 2,689,678 to 2,693,565 purL
Group Condition b2554 b2555 b2556 b4441 b2557
yfhA yfhG yfhK glmY purL
carbon source Ying_OrganicAcid7 rep B; time point 3 -0.1 -0.3 -0.0 -0.7 -8.0
msc 22hr_MSC_rep1_lowinoculum -0.2 -0.4 -0.3 -0.2 -7.9
carbon source Ying_OrganicAcid7 rep C; time point 3 -0.3 -0.2 +0.0 -0.6 -7.8
carbon source Ying_sugar7 rep B; time point 3 -0.4 -0.4 +0.1 -0.2 -8.1
carbon source Ying_sugar7 rep B; time point 2 -0.4 -0.3 -0.0 -0.3 -7.8
carbon source Ying_sugar7 rep A; time point 3 -0.1 -0.4 +0.2 -0.4 -8.0
carbon source Ying_sugar7 rep C; time point 3 -0.4 -0.1 -0.1 -0.2 -7.9
carbon source Ying_sugar7 rep C; time point 2 -0.3 -0.3 -0.1 +0.3 -8.2
carbon source carbon source D-Mannose 0.5mM +0.2 -0.1 +0.3 -1.9 -6.9
carbon source Ying_OrganicAcid7 rep A; time point 3 -0.3 -0.1 +0.0 -0.2 -7.8
carbon source Ying_sugar7 rep A; time point 2 -0.1 -0.3 +0.0 +0.1 -8.0
msc 6hr_MSC_rep1_lowinoculum +0.0 -0.2 -0.3 -0.1 -7.7
carbon source Ying_AminoAcid20 rep C; time point 3 +0.1 -0.0 +0.0 -0.3 -7.9
carbon source Ying_AminoAcid20 rep A; time point 3 +0.0 -0.1 -0.0 +0.1 -8.0
carbon source Ying_OrganicAcid7 rep A; time point 2 -0.3 -0.2 +0.0 -0.3 -7.1
carbon source Ying_AminoAcid20 rep B; time point 3 +0.0 -0.1 +0.2 +0.0 -7.9
msc 22hr_MSC_rep2_lowinoculum -0.1 -0.1 -0.0 +0.0 -7.5
carbon source Ying_OrganicAcid7 rep C; time point 2 -0.1 -0.3 +0.0 -0.4 -6.5
carbon source Ying_AminoAcid20 rep A; time point 2 -0.1 +0.0 +0.2 +0.2 -7.3
carbon source Ying_AminoAcid20 rep C; time point 2 +0.1 -0.2 +0.1 +0.3 -7.2
carbon source Ying_AminoAcid20 rep B; time point 2 -0.0 +0.1 -0.0 +0.5 -7.3
carbon source Ying_OrganicAcid7 rep B; time point 2 +0.0 -0.4 +0.1 +0.3 -6.7
msc 6hr_MSC_rep2_lowinoculum -0.1 -0.1 +0.1 +0.5 -6.8
carbon source carbon source D-Glucose 5mM -0.4 +0.2 +0.4 -0.9 -5.3
carbon source carbon source D-Mannose 20mM +0.1 +0.4 +0.3 +0.2 -6.5
carbon source carbon source D-Mannose 1mM +0.2 +0.2 +0.4 +0.0 -6.3
carbon source carbon source D-Glucose 1mM +0.0 +0.2 +0.2 +0.8 -6.2
carbon source carbon source D-Glucose 0.5mM +0.1 -0.2 +0.4 +0.8 -6.0
carbon source carbon source D-Mannose 1mM -0.1 -0.1 +0.3 +1.5 -6.0
carbon source carbon source D-Mannose 5mM +0.1 +0.2 +0.4 +1.2 -5.4
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