Fitness for 5 genes in Escherichia coli BW25113

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500 ntglnB and yfhA are separated by 60 nucleotidesyfhA and yfhG overlap by 11 nucleotidesyfhG and yfhK are separated by 164 nucleotidesyfhK and glmY are separated by 58 nucleotides b2553: glnB - regulatory protein P-II for glutamine synthetase (NCBI), at 2,685,092 to 2,685,430 glnB b2554: yfhA - predicted DNA-binding response regulator in two-component system (NCBI), at 2,685,491 to 2,686,825 yfhA b2555: yfhG - hypothetical protein (NCBI), at 2,686,815 to 2,687,528 yfhG b2556: yfhK - putative 2-component sensor protein (VIMSS), at 2,687,693 to 2,689,120 yfhK b4441: glmY - sRNA activator of glmS mRNA (RefSeq), at 2,689,179 to 2,689,362 glmY
Group Condition b2553 b2554 b2555 b2556 b4441
glnB yfhA yfhG yfhK glmY
stress octanol 0.08 vol% -3.3 -0.2 -1.3 +0.1 -3.6
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM -4.0 -0.4 -0.4 -0.4 -2.8
stress LB Aerobic with Irgasan 0.0000003125 mM -1.6 -1.7 -1.0 -1.5 -2.0
stress undecene 2.5 vol% -1.1 -1.3 -1.2 -1.0 -2.8
stress undecene 5 vol% -0.8 -1.5 -1.2 -0.9 -2.5
stress Cephalothin 0.01 mg/ml -3.2 -0.9 -0.6 -0.4 -1.0
stress undecene 2.5 vol% -1.3 -1.3 -1.4 -0.9 -1.1
stress LB Anaerobic with Cephalothin 0.0000078125 mM -4.5 -0.2 +0.1 -0.2 -1.1
stress undecene 5 vol% -0.9 -1.5 -1.2 -0.9 -1.3
stress Carbenicillin 0.008 mg/ml -2.1 -0.5 -0.5 -0.3 -1.8
phage Ste41 -1.7 +0.0 -0.5 -0.1 -2.3
stress Benzalkonium Chloride 0.004 mg/ml -3.1 -0.4 -0.2 -0.4 -0.3
stress 2,4-Dinitrophenol 2 mM -2.0 -0.6 -0.6 -0.3 -0.7
stress LB Anaerobic with Furaltadone 0.000015625 mM -3.0 -0.1 +0.1 +0.1 -0.8
stress Tetracycline 0.0008 mg/ml -1.3 -0.3 +0.1 +0.1 -1.8
stress LB Anaerobic with Ampicillin 0.00000195313 mM -1.7 -0.2 +0.1 +0.2 -1.4
stress LB Aerobic with Zinc Pyrithione 0.0000025 mM -3.3 +0.3 +0.6 +0.2 -0.6
predation 6 hr rep2_HD100_10fold_dilution_grewON -1.3 +0.3 -0.0 +0.3 -1.6
stress LB Aerobic with Nitrofurantoin 0.00003125 mM -2.8 +0.3 -0.1 +0.4 +0.5
stress LB Aerobic with 2-Mercaptopyridine N-oxide 0.0000078125 mM -2.8 +0.5 +0.6 +0.4 -0.4
stress LB Aerobic with 2-Mercaptopyridine N-oxide 0.0000078125 mM -3.0 +0.5 +0.4 +0.2 +0.3
stress LB Aerobic with Zinc Pyrithione 0.0000025 mM -2.9 +0.6 +0.7 +0.2 -0.1
stress LB Anaerobic with Chlorhexidine diacetate salt 0.000000625 mM -2.2 -0.1 +0.0 +0.1 +1.2
stress Chlorite 1.25 mM -2.2 -0.0 -0.0 +0.0 +1.5
stress LB Aerobic with Ramoplanin 0.000125 mM -0.9 +0.7 +0.7 +0.2 -1.0
phage Phage_N4_cage_3_mouse_4_Cecum_40 hr -1.5 +0.1 +0.1 -0.0 +1.9
stress LB Anaerobic with Spiramycin 0.000125 mM -1.6 +0.4 +0.1 +0.2 +1.6
phage T7_phage 0.0015625 MOI TC2 -0.3 +0.6 +0.6 +0.3 +1.6
plasmid transformation vcDART vector transformation; liquid outgrowth assay -0.1 +0.7 +0.7 +0.8 +1.1
plasmid transformation mariner vector transformation; liquid outgrowth assay +0.9 +0.8 +1.1 +0.9 +0.1
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