Fitness for 5 genes in Escherichia coli BW25113

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500 ntsuhB and yfhR are separated by 144 nucleotidesyfhR and csiE are separated by 190 nucleotidescsiE and hcaT overlap by 9 nucleotideshcaT and hcaR are separated by 159 nucleotides b2533: suhB - inositol monophosphatase (NCBI), at 2,661,464 to 2,662,267 suhB b2534: yfhR - predicted peptidase (RefSeq), at 2,662,412 to 2,663,266 yfhR b2535: csiE - orf, hypothetical protein (VIMSS), at 2,663,457 to 2,664,737 csiE b2536: hcaT - predicted 3-phenylpropionic transporter (NCBI), at 2,664,729 to 2,665,868 hcaT b2537: hcaR - DNA-binding transcriptional activator of 3-phenylpropionic acid catabolism (NCBI), at 2,666,028 to 2,666,918 hcaR
Group Condition b2533 b2534 b2535 b2536 b2537
suhB yfhR csiE hcaT hcaR
phage T7_phage 0.00015625 MOI TC4 N.D. -0.5 -1.3 -0.1 -0.4
phage Ste41 N.D. -0.4 -0.1 -0.1 -1.3
phage T7_phage 0.0015625 MOI TC1 N.D. -0.4 -0.7 -0.3 -0.1
phage RB68 N.D. -0.4 -0.2 -0.4 -0.4
phage RB68 N.D. -0.3 -0.4 -0.1 -0.5
phage phage N.D. -0.2 -0.6 +0.0 -0.5
carbon source D-Serine (C) N.D. -0.2 -0.9 +0.1 +0.1
phage Ste41 N.D. -0.4 -0.6 +0.4 -0.4
stress LB Anaerobic with Furaltadone 0.000015625 mM N.D. -0.5 +0.2 -0.2 -0.4
stress Ciprofloxacin Hydrochloride 0.0024 mM N.D. +0.2 +0.3 -0.4 -0.9
control PBS_cage_2_mouse_2_Cecum_40 hr N.D. +0.3 -0.2 -0.4 -0.4
phage T7_phage 0.00015625 MOI TC3 N.D. +0.4 -0.2 -0.3 -0.5
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM N.D. -0.3 +0.1 +0.4 -0.8
carbon source Dodecane and Rhamnolipid (C) N.D. -0.6 +0.5 -0.2 -0.0
carbon source Dodecanol and Rhamnolipid (C) N.D. -0.2 +0.9 -0.4 -0.6
control PBS_cage_2_mice _Feces_22 hr N.D. +0.6 -0.1 -0.5 -0.1
carbon source Dodecanol and Rhamnolipid (C) N.D. -0.6 +0.9 -0.2 -0.1
carbon source Dodecane and Rhamnolipid (C) N.D. -0.2 +0.8 -0.2 +0.1
control PBS_cage_1_mice _Feces_22 hr N.D. +0.5 +0.1 -0.3 +0.4
carbon source succinate (C) N.D. -0.1 +0.8 -0.1 +0.2
stress LB Aerobic with Irgasan 0.0000003125 mM N.D. +0.8 +0.3 -0.2 +0.2
carbon source succinate (C) N.D. -0.0 +0.8 +0.3 +0.2
control PBS_cage_1_mouse_1_Cecum_40 hr N.D. +0.9 +0.3 -0.3 +0.4
carbon source Ying_Nucleobase14 rep B; time point 3 N.D. +0.1 +0.3 +0.9 +0.1
carbon source Ying_Nucleobase14 rep C; time point 3 N.D. +0.0 +0.1 +1.0 +0.3
carbon source Ying_Nucleobase14 rep A; time point 3 N.D. +0.0 +0.2 +1.1 +0.2
carbon source L-Malic (C) N.D. -0.1 +1.4 +0.1 +0.2
carbon source L-Malic (C) N.D. -0.1 +1.4 +0.1 +0.4
carbon source Glycolic Acid (C) N.D. -0.0 +2.4 +0.2 +0.1
carbon source Glycolic Acid (C) N.D. -0.1 +2.6 +0.4 +0.3
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