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Protein
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Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
iscR and yfhQ are separated by 451 nucleotides
yfhQ and suhB are separated by 118 nucleotides
suhB and yfhR are separated by 144 nucleotides
yfhR and csiE are separated by 190 nucleotides
b2531: iscR - DNA-binding transcriptional repressor (NCBI), at 2,659,665 to 2,660,153
iscR
b2532: yfhQ - predicted methyltransferase (NCBI), at 2,660,605 to 2,661,345
yfhQ
b2533: suhB - inositol monophosphatase (NCBI), at 2,661,464 to 2,662,267
suhB
b2534: yfhR - predicted peptidase (RefSeq), at 2,662,412 to 2,663,266
yfhR
b2535: csiE - orf, hypothetical protein (VIMSS), at 2,663,457 to 2,664,737
csiE
Group
Condition
b2531
b2532
b2533
b2534
b2535
iscR
yfhQ
suhB
yfhR
csiE
stress
Tailocin 256
-6.7
-0.2
N.D.
-0.1
-0.0
carbon source
carbon source D-Mannose 1mM
-5.8
-0.5
N.D.
-0.1
+0.1
stress
octanol 0.08 vol%
-5.0
-0.5
N.D.
-0.2
-0.0
phage
T7_phage 0.00015625 MOI TC4
-4.5
+0.6
N.D.
-0.5
-1.3
motility
outer cut, LB soft agar motility assay
-5.4
+0.2
N.D.
-0.2
-0.2
gfp_control
GFP_control
-6.2
+0.4
N.D.
+0.3
+0.0
phage
T7_phage 0.0015625 MOI TC1
-5.2
+0.8
N.D.
-0.4
-0.7
stress
toluene 2.5 vol%
-5.4
+0.4
N.D.
-0.4
-0.0
phage
Goslar
-5.6
-0.3
N.D.
+0.1
+0.5
control
PBS_cage_2_mouse_1_Cecum_40 hr
-4.4
-0.3
N.D.
+0.1
-0.1
sir2-hera
SIR2-HerA
-4.9
-0.1
N.D.
+0.2
+0.2
phage
T7_phage 0.00015625 MOI TC3
-5.1
+0.3
N.D.
+0.4
-0.2
phage
Mnm12
-4.3
-0.0
N.D.
-0.2
+0.0
stress
Isobutyl alcohol 1.25 vol%
-4.4
+0.0
N.D.
+0.1
+0.0
phage
Δdbn_10
-4.2
+0.0
N.D.
-0.2
+0.1
phage
T7_phage 0.00015625 MOI TC2
-4.2
+0.3
N.D.
-0.0
-0.3
phage
Lambda_ci1857
-3.1
-1.2
N.D.
+0.2
-0.1
stress
3-methyl-1-butanol 1.25 vol%
-3.5
-0.8
N.D.
+0.2
+0.0
phage
T7_phage 0.0015625 MOI TC2
-4.2
+0.1
N.D.
-0.0
+0.5
stress
Cisplatin 0.1 mg/ml
-4.1
+0.3
N.D.
+0.2
+0.1
phage
phage
-3.1
+0.7
N.D.
-0.2
-0.6
phage
NpK
-3.3
+0.4
N.D.
+0.7
+0.2
stress
Trimethoprim 0.0025 mM
+3.0
-1.1
N.D.
+0.1
+0.3
carbon source
succinate (C)
+4.3
-1.0
N.D.
-0.1
+0.8
carbon source
succinate (C)
+4.6
-0.9
N.D.
-0.0
+0.8
plasmid transformation
vcDART vector transformation; agar assay
+3.5
+0.8
N.D.
+0.4
-0.1
carbon source
L-Malic (C)
+4.7
-0.7
N.D.
-0.1
+1.4
carbon source
L-Malic (C)
+4.6
-0.7
N.D.
-0.1
+1.4
carbon source
Glycolic Acid (C)
+4.9
-0.2
N.D.
-0.1
+2.6
carbon source
Glycolic Acid (C)
+5.1
+0.1
N.D.
-0.0
+2.4
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