Fitness for 5 genes in Escherichia coli BW25113

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500 ntdapA and gcvR are separated by 145 nucleotidesgcvR and bcp overlap by 1 nucleotidesbcp and hyfA are separated by 252 nucleotideshyfA and hyfB overlap by 1 nucleotides b2478: dapA - dihydrodipicolinate synthase (NCBI), at 2,596,904 to 2,597,782 dapA b2479: gcvR - transcriptional regulation of gcv operon (VIMSS), at 2,597,928 to 2,598,500 gcvR b2480: bcp - thioredoxin-dependent thiol peroxidase (NCBI), at 2,598,500 to 2,598,970 bcp b2481: hyfA - hydrogenase 4 Fe-S subunit (VIMSS), at 2,599,223 to 2,599,840 hyfA b2482: hyfB - NADH dehydrogenase subunit N (NCBI), at 2,599,840 to 2,601,858 hyfB
Group Condition b2478 b2479 b2480 b2481 b2482
dapA gcvR bcp hyfA hyfB
carbon source Ying_sugar7 rep B; time point 2 N.D. -6.9 -0.0 -0.4 -0.0
carbon source Ying_sugar7 rep C; time point 2 N.D. -6.9 +0.1 -0.5 -0.0
carbon source carbon source D-Mannose 5mM N.D. -5.5 -0.7 -0.0 -0.9
carbon source Ying_sugar7 rep B; time point 3 N.D. -6.7 +0.2 -0.4 +0.1
carbon source Ying_sugar7 rep A; time point 3 N.D. -6.7 -0.0 -0.1 -0.1
carbon source Ying_sugar7 rep C; time point 3 N.D. -6.6 +0.2 -0.3 -0.1
carbon source Ying_OrganicAcid7 rep B; time point 3 N.D. -6.8 +0.5 -0.2 +0.1
carbon source Ying_sugar7 rep A; time point 2 N.D. -6.3 +0.2 -0.2 -0.1
carbon source carbon source D-Glucose 0.25mM N.D. -5.8 -0.1 -0.2 -0.1
carbon source Ying_Nucleobase14 rep B; time point 3 N.D. -6.5 +0.3 -0.2 +0.2
carbon source carbon source D-Glucose 20mM N.D. -4.3 -0.6 -0.8 -0.5
carbon source Ying_Nucleobase14 rep A; time point 3 N.D. -5.7 +0.1 -0.4 -0.1
carbon source Ying_OrganicAcid7 rep A; time point 3 N.D. -6.4 +0.6 -0.1 -0.0
carbon source Ying_Nucleobase14 rep C; time point 3 N.D. -6.3 +0.3 -0.1 +0.2
carbon source Ying_OrganicAcid7 rep A; time point 2 N.D. -5.9 +0.1 -0.1 +0.0
carbon source Ying_OrganicAcid7 rep C; time point 3 N.D. -6.4 +0.5 +0.0 +0.1
carbon source carbon source D-Mannose 0.5mM N.D. -5.4 +0.1 -0.3 -0.1
carbon source Glucose (C) N.D. -5.5 +0.0 -0.4 +0.1
carbon source carbon source D-Glucose 0.5mM N.D. -4.6 -0.2 -0.7 -0.1
carbon source Carbon source D-Mannitol 5 mM N.D. -5.4 -0.2 -0.1 +0.0
carbon source carbon source D-Glucose 20mM N.D. -6.2 +0.7 -0.3 +0.3
carbon source Ying_Nucleobase14 rep B; time point 2 N.D. -5.8 +0.3 -0.1 +0.1
carbon source carbon source D-Mannose 5mM N.D. -5.1 +0.1 -0.2 -0.2
carbon source carbon source D-Mannose 0.5mM N.D. -4.2 +0.5 -1.4 -0.1
carbon source carbon source D-Mannose 20mM N.D. -5.9 +0.8 -0.1 +0.2
carbon source carbon source D-Mannose 1mM N.D. -5.9 +0.5 +0.7 +0.1
carbon source carbon source D-Glucose 0.5mM N.D. -4.8 +0.6 -0.4 +0.1
carbon source carbon source D-Glucose 1mM N.D. -4.7 +0.8 -0.5 -0.1
carbon source L-Malic (C) N.D. -3.5 +0.9 -0.6 -0.3
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) N.D. -4.4 +1.0 -0.0 +0.3
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