Fitness for 5 genes in Escherichia coli BW25113

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500 ntxapR and xapB are separated by 251 nucleotidesxapB and xapA are separated by 59 nucleotidesxapA and yfeN are separated by 248 nucleotidesyfeN and yfeR are separated by 38 nucleotides b2405: xapR - DNA-binding transcriptional activator (NCBI), at 2,519,615 to 2,520,499 xapR b2406: xapB - xanthosine transporter (NCBI), at 2,520,751 to 2,522,007 xapB b2407: xapA - purine nucleoside phosphorylase (NCBI), at 2,522,067 to 2,522,900 xapA b2408: yfeN - conserved outer membrane protein (NCBI), at 2,523,149 to 2,523,913 yfeN b2409: yfeR - predicted DNA-binding transcriptional regulator (NCBI), at 2,523,952 to 2,524,878 yfeR
Group Condition b2405 b2406 b2407 b2408 b2409
xapR xapB xapA yfeN yfeR
stress LB Anaerobic with Furaltadone 0.000015625 mM -0.5 +0.1 -0.1 -0.3 -0.9
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.6 +0.0 +0.1 -0.3 -0.7
motility outer cut, LB soft agar motility assay +0.0 +0.2 -0.3 -0.3 -1.1
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM +0.2 -0.1 -0.7 -0.3 -0.7
motility outer cut, LB soft agar motility assay -0.0 +0.0 -0.3 -0.3 -0.9
stress LB Anaerobic with Phenazine ethosulfate 0.000125 mM -0.0 -0.1 -0.1 -0.6 -0.7
stress Cisplatin 0.1 mg/ml -0.3 -0.0 -0.8 +0.0 -0.2
plasmid transformation mariner vector transformation; liquid outgrowth assay -0.2 -0.1 -0.8 +0.2 -0.4
plasmid transformation mariner vector transformation; liquid outgrowth assay -0.3 -0.3 -0.2 +0.3 -0.7
carbon source carbon source D-Mannose 0.5mM -0.9 +0.1 -0.0 +0.2 -0.6
stress LB Aerobic with Benzethonium chloride 0.000015625 mM +0.1 +0.0 -1.0 -0.4 +0.2
carbon source acetate (C) +0.0 +0.1 +0.1 +0.1 -1.1
stress LB Anaerobic with Nitrofurantoin 0.00003125 mM +0.1 +0.4 +0.5 -0.3 -1.3
stress octanol 0.08 vol% +0.3 +0.2 +0.1 -0.0 -1.0
stress LB Anaerobic with Amoxicillin 0.0000078125 mM -0.6 -0.1 -0.2 +0.6 +0.2
carbon source carbon source D-Glucose 0.25mM -0.1 -0.4 -0.5 +0.5 +0.6
predation 6 hr rep1_HD100_10fold_dilution_grewON +0.0 +0.1 +0.2 +0.5 -0.8
carbon source carbon source D-Mannose 5mM -0.2 +0.3 -0.5 -0.0 +0.9
phage T7_phage 0.00015625 MOI TC4 -0.0 -0.3 -0.3 +0.3 +0.8
phage phage +0.3 -0.2 -0.2 +0.2 +0.7
stress LB Anaerobic with Cephalothin 0.0000078125 mM +0.2 -0.2 -0.2 +0.5 +0.3
phage T7_phage 0.0015625 MOI TC1 +0.2 -0.1 -0.4 +0.5 +1.0
lb LB +0.3 +0.0 -0.2 +0.4 +0.7
attachment_assay_attached_sample Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB +0.4 +0.0 -0.3 +0.3 +0.9
phage N4_phage 0.0009375 MOI TC2 -0.1 +0.2 +0.1 +0.5 +0.6
phage Ste41 +0.3 -0.5 -0.1 +0.5 +1.3
phage RB68 -0.0 +0.1 +0.0 +0.3 +1.2
phage Ste41 -0.3 +0.3 +0.3 +0.1 +1.5
stress Ciprofloxacin Hydrochloride 0.0003 mM +0.6 +0.0 +0.3 +0.3 +0.7
stress LB Anaerobic with Amoxicillin 0.0000078125 mM +0.1 +0.0 -0.0 +0.5 +1.3
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