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Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
xapR and xapB are separated by 251 nucleotides
xapB and xapA are separated by 59 nucleotides
xapA and yfeN are separated by 248 nucleotides
yfeN and yfeR are separated by 38 nucleotides
b2405: xapR - DNA-binding transcriptional activator (NCBI), at 2,519,615 to 2,520,499
xapR
b2406: xapB - xanthosine transporter (NCBI), at 2,520,751 to 2,522,007
xapB
b2407: xapA - purine nucleoside phosphorylase (NCBI), at 2,522,067 to 2,522,900
xapA
b2408: yfeN - conserved outer membrane protein (NCBI), at 2,523,149 to 2,523,913
yfeN
b2409: yfeR - predicted DNA-binding transcriptional regulator (NCBI), at 2,523,952 to 2,524,878
yfeR
Group
Condition
b2405
b2406
b2407
b2408
b2409
xapR
xapB
xapA
yfeN
yfeR
stress
LB Anaerobic with Furaltadone 0.000015625 mM
-0.5
+0.1
-0.1
-0.3
-0.9
micoeukaryotes
Tetrahymena sp., Mixed culture-1
-0.6
+0.0
+0.1
-0.3
-0.7
motility
outer cut, LB soft agar motility assay
+0.0
+0.2
-0.3
-0.3
-1.1
stress
LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM
+0.2
-0.1
-0.7
-0.3
-0.7
motility
outer cut, LB soft agar motility assay
-0.0
+0.0
-0.3
-0.3
-0.9
stress
LB Anaerobic with Phenazine ethosulfate 0.000125 mM
-0.0
-0.1
-0.1
-0.6
-0.7
stress
Cisplatin 0.1 mg/ml
-0.3
-0.0
-0.8
+0.0
-0.2
plasmid transformation
mariner vector transformation; liquid outgrowth assay
-0.2
-0.1
-0.8
+0.2
-0.4
plasmid transformation
mariner vector transformation; liquid outgrowth assay
-0.3
-0.3
-0.2
+0.3
-0.7
carbon source
carbon source D-Mannose 0.5mM
-0.9
+0.1
-0.0
+0.2
-0.6
stress
LB Aerobic with Benzethonium chloride 0.000015625 mM
+0.1
+0.0
-1.0
-0.4
+0.2
carbon source
acetate (C)
+0.0
+0.1
+0.1
+0.1
-1.1
stress
LB Anaerobic with Nitrofurantoin 0.00003125 mM
+0.1
+0.4
+0.5
-0.3
-1.3
stress
octanol 0.08 vol%
+0.3
+0.2
+0.1
-0.0
-1.0
stress
LB Anaerobic with Amoxicillin 0.0000078125 mM
-0.6
-0.1
-0.2
+0.6
+0.2
carbon source
carbon source D-Glucose 0.25mM
-0.1
-0.4
-0.5
+0.5
+0.6
predation
6 hr rep1_HD100_10fold_dilution_grewON
+0.0
+0.1
+0.2
+0.5
-0.8
carbon source
carbon source D-Mannose 5mM
-0.2
+0.3
-0.5
-0.0
+0.9
phage
T7_phage 0.00015625 MOI TC4
-0.0
-0.3
-0.3
+0.3
+0.8
phage
phage
+0.3
-0.2
-0.2
+0.2
+0.7
stress
LB Anaerobic with Cephalothin 0.0000078125 mM
+0.2
-0.2
-0.2
+0.5
+0.3
phage
T7_phage 0.0015625 MOI TC1
+0.2
-0.1
-0.4
+0.5
+1.0
lb
LB
+0.3
+0.0
-0.2
+0.4
+0.7
attachment_assay_attached_sample
Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB
+0.4
+0.0
-0.3
+0.3
+0.9
phage
N4_phage 0.0009375 MOI TC2
-0.1
+0.2
+0.1
+0.5
+0.6
phage
Ste41
+0.3
-0.5
-0.1
+0.5
+1.3
phage
RB68
-0.0
+0.1
+0.0
+0.3
+1.2
phage
Ste41
-0.3
+0.3
+0.3
+0.1
+1.5
stress
Ciprofloxacin Hydrochloride 0.0003 mM
+0.6
+0.0
+0.3
+0.3
+0.7
stress
LB Anaerobic with Amoxicillin 0.0000078125 mM
+0.1
+0.0
-0.0
+0.5
+1.3
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