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Cofit
Protein
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Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
yfeO and ypeC are separated by 114 nucleotides
ypeC and mntH are separated by 140 nucleotides
mntH and nupC are separated by 335 nucleotides
nupC and yi81_3 are separated by 86 nucleotides
b2389: yfeO - hypothetical protein (NCBI), at 2,507,652 to 2,508,908
yfeO
b2390: ypeC - hypothetical protein (NCBI), at 2,509,023 to 2,509,349
ypeC
b2392: mntH - manganese transport protein MntH (NCBI), at 2,509,490 to 2,510,728
mntH
b2393: nupC - nucleoside (except guanosine) transporter (NCBI), at 2,511,064 to 2,512,266
nupC
b2394: yi81_3 - IS186 hypothetical protein (VIMSS), at 2,512,353 to 2,513,465
_3
Group
Condition
b2389
b2390
b2392
b2393
b2394
yfeO
ypeC
mntH
nupC
yi81_3
stress
limonene 1.25 vol%
+0.0
-0.4
-6.0
+0.5
N.D.
stress
undecene 2.5 vol%
+0.0
-0.2
-6.1
+0.6
N.D.
stress
undecene 2.5 vol%
-0.1
-0.1
-5.7
+0.6
N.D.
stress
limonene 1.25 vol%
+0.1
-0.1
-6.0
+0.7
N.D.
stress
limonene 2.5 vol%
+0.1
+0.1
-5.7
+0.9
N.D.
stress
undecene 5 vol%
+0.0
-0.3
-5.2
+0.9
N.D.
stress
undecene 5 vol%
-0.1
+0.2
-5.4
+0.9
N.D.
stress
limonene 2.5 vol%
-0.1
+0.1
-5.3
+1.0
N.D.
stress
pinene 5 vol%
+0.0
-0.4
-4.3
+0.3
N.D.
stress
pinene 5 vol%
+0.1
+0.1
-4.3
+0.5
N.D.
stress
3-methyl-2-butenol 1.25 vol%
-0.0
-0.3
-3.4
+0.3
N.D.
stress
3-methyl-2-butenol 1.25 vol%
+0.2
-0.1
-3.6
+0.6
N.D.
carbon source
Glycolic Acid (C)
-0.2
-0.0
-1.3
-1.3
N.D.
stress
limonene 5 vol%
+0.1
-0.6
-3.0
+0.9
N.D.
stress
Bacitracin 1 mg/ml
-0.1
+0.2
-2.5
-0.1
N.D.
stress
limonene 5 vol%
+0.2
+0.1
-3.7
+1.1
N.D.
stress
Chlorite 1.25 mM
-0.1
+0.4
-2.4
-0.1
N.D.
stress
pinene 0.3125 vol%
-0.1
-0.3
-2.0
+0.6
N.D.
carbon source
carbon source D-Mannose 0.5mM
+0.1
-0.3
-1.9
+0.6
N.D.
carbon source
L-Fucose (C)
-0.1
-0.2
-1.5
+1.0
N.D.
stress
2-Furfuraldehyde 0.25 vol%
-0.1
+0.2
+0.8
-1.7
N.D.
stress
LB Aerobic with Irgasan 0.0000003125 mM
-0.3
+0.2
+0.9
-1.5
N.D.
carbon source
L-Fucose (C)
-0.1
-0.2
-1.3
+1.1
N.D.
stress
Spectinomycin 0.0125 mg/ml
-0.0
-0.3
-2.8
+3.2
N.D.
stress
Spectinomycin 0.00625 mg/ml
+0.2
+0.2
-1.9
+1.6
N.D.
plasmid transformation
mariner vector transformation; liquid outgrowth assay
+0.7
+0.4
+0.5
-1.4
N.D.
stress
Benzalkonium Chloride 0.004 mg/ml
+0.0
+1.2
-0.8
+1.1
N.D.
stress
1-ethyl-3-methylimidazolium acetate 30 mM
+0.1
+0.5
-0.8
+1.9
N.D.
stress
1-ethyl-3-methylimidazolium chloride 40 mM
+0.3
-0.2
-0.9
+3.5
N.D.
stress
1-ethyl-3-methylimidazolium chloride 80 mM
+0.3
+0.5
-1.5
+3.6
N.D.
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