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Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
yfcY and b2343 are separated by 180 nucleotides
b2343 and fadL are separated by 371 nucleotides
fadL and yfdF are separated by 365 nucleotides
yfdF and vacJ are separated by 181 nucleotides
b2342: yfcY - acetyl-CoA acetyltransferase (NCBI), at 2,457,181 to 2,458,491
yfcY
b2343: b2343 - orf, hypothetical protein (VIMSS), at 2,458,672 to 2,458,956
b2343
b2344: fadL - long-chain fatty acid outer membrane transporter (RefSeq), at 2,459,328 to 2,460,668
fadL
b2345: yfdF - hypothetical protein (NCBI), at 2,461,034 to 2,462,092
yfdF
b2346: vacJ - predicted lipoprotein (NCBI), at 2,462,274 to 2,463,029
vacJ
Group
Condition
b2342
b2343
b2344
b2345
b2346
yfcY
b2343
fadL
yfdF
vacJ
stress
Nalidixic 0.06 mM
-0.2
-0.4
-0.3
N.D.
-5.8
stress
Benzalkonium Chloride 0.004 mg/ml
+0.4
-2.1
+0.0
N.D.
-4.0
stress
Nalidixic 0.06 mM
-0.2
+0.5
-0.4
N.D.
-5.4
stress
Nalidixic 0.0313 mM
+0.1
-0.5
-0.3
N.D.
-4.3
stress
Nalidixic 0.006 mg/ml
-0.1
-0.1
-0.5
N.D.
-4.2
stress
octanol 0.08 vol%
+0.6
-1.4
+0.6
N.D.
-4.7
supernatant
LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
-0.2
-0.6
-0.1
N.D.
-3.8
stress
LB Anaerobic with Cephalothin 0.0000078125 mM
-0.8
-1.0
-0.4
N.D.
-2.3
gfp_control
GFP_control
-0.4
-3.3
-0.2
N.D.
-0.5
stress
LB Anaerobic with Benzethonium chloride 0.000015625 mM
+0.1
-0.5
-0.0
N.D.
-3.8
stress
undecene 5 vol%
+0.1
-0.0
+0.5
N.D.
-4.6
stress
undecene 5 vol%
-0.1
+0.4
+0.3
N.D.
-4.5
stress
LB Aerobic with Doxycycline hyclate 0.00000625 mM
-0.2
+0.5
-0.6
N.D.
-3.6
stress
2,4-Dinitrophenol 2 mM
+0.1
-0.0
+1.1
N.D.
-4.8
stress
limonene 2.5 vol%
-0.0
+0.5
-0.1
N.D.
-3.5
stress
undecene 2.5 vol%
+0.0
+0.5
+0.5
N.D.
-3.9
phage
T7_phage 0.00015625 MOI TC4
-0.3
-2.8
+1.3
N.D.
-0.8
stress
LB Anaerobic with Benzethonium chloride 0.00003125 mM
-0.8
+0.6
+0.5
N.D.
-2.5
stress
2,4-Dinitrophenol 2 mM
+0.2
-0.4
+1.3
N.D.
-3.2
supernatant
RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
+0.2
+1.0
+0.2
N.D.
-3.3
stress
LB Aerobic with Ramoplanin 0.000125 mM
+0.1
-1.6
-2.4
N.D.
+2.8
stress
LB Aerobic with Ramoplanin 0.000125 mM
-0.2
+0.0
-2.6
N.D.
+2.9
stress
LB Anaerobic with Chlorhexidine diacetate salt 0.000000625 mM
+0.2
-0.6
-0.3
N.D.
+3.7
stress
LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM
+0.5
-1.0
-1.1
N.D.
+4.6
stress
LB Anaerobic with Chlorhexidine diacetate salt 0.000000625 mM
+0.3
-0.3
-0.3
N.D.
+3.6
stress
LB Anaerobic with Vancomycin Hydrochloride from Streptomyces orientalis 0.00003125 mM
-0.1
-0.6
+0.4
N.D.
+4.7
stress
LB Anaerobic with Ceftriaxone hemi(heptahydrate) 0.000000625 mM
+0.0
+0.6
+0.3
N.D.
+3.6
stress
LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM
+0.8
-0.6
-0.9
N.D.
+5.4
stress
LB Anaerobic with Vancomycin Hydrochloride from Streptomyces orientalis 0.00003125 mM
-0.0
-0.2
+0.2
N.D.
+5.1
stress
LB Aerobic with Irgasan 0.0000003125 mM
-0.0
+0.2
+8.2
N.D.
+3.4
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