Fitness for 5 genes in Escherichia coli BW25113

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500 ntglpA and glpB overlap by 11 nucleotidesglpB and glpC overlap by 4 nucleotidesglpC and yfaD are separated by 192 nucleotidesyfaD and ypaA are separated by 12 nucleotides b2241: glpA - sn-glycerol-3-phosphate dehydrogenase (anaerobic), large subunit, FAD/NAD(P)-binding (NCBI), at 2,350,669 to 2,352,297 glpA b2242: glpB - anaerobic glycerol-3-phosphate dehydrogenase subunit B (NCBI), at 2,352,287 to 2,353,546 glpB b2243: glpC - sn-glycerol-3-phosphate dehydrogenase (anaerobic), small subunit (NCBI), at 2,353,543 to 2,354,733 glpC b2244: yfaD - hypothetical protein (NCBI), at 2,354,926 to 2,355,825 yfaD b4543: ypaA - predicted protein (NCBI), at 2,355,838 to 2,356,023 ypaA
Group Condition b2241 b2242 b2243 b2244 b4543
glpA glpB glpC yfaD ypaA
stress LB Anaerobic with Vancomycin Hydrochloride from Streptomyces orientalis 0.00003125 mM -2.0 -2.1 -2.1 -0.5 +0.3
stress LB Anaerobic with Irgasan 0.000000625 mM -1.6 -1.3 -1.7 +0.2 -0.7
stress LB Anaerobic with Irgasan 0.000000625 mM -1.3 -2.0 -1.6 +0.1 -0.2
stress LB Anaerobic with Vancomycin Hydrochloride from Streptomyces orientalis 0.00003125 mM -1.7 -2.0 -1.6 +0.3 +0.6
stress LB Anaerobic with Spiramycin 0.000125 mM -1.3 -1.3 -1.2 -0.1 -0.5
stress LB Anaerobic with Nitrofurantoin 0.000015625 mM -1.4 -0.7 -1.6 -0.2 +0.2
stress LB Anaerobic with Spiramycin 0.000125 mM -1.2 -0.8 -1.1 -0.2 -0.3
stress LB Anaerobic with Ciprofloxacin Hydrochloride 0.0000000390625 mM -0.0 -0.1 -0.4 -0.3 -2.3
stress LB Anaerobic with Nitrofurantoin 0.000015625 mM -0.7 -0.6 -1.0 -0.1 -0.3
stress LB Anaerobic with Furaltadone 0.000015625 mM -0.5 -0.6 -0.7 +0.5 -1.2
stress LB Anaerobic with Spiramycin 0.00003125 mM -0.8 -0.6 -0.7 -0.1 -0.1
stress LB Anaerobic with Chlorhexidine diacetate salt 0.000000625 mM -0.9 -0.4 -0.8 +0.4 -0.4
stress LB Anaerobic with Chlorhexidine diacetate salt 0.000000625 mM -1.0 -0.6 -0.5 +0.0 +0.1
stress LB Anaerobic with Doxycycline hyclate 0.000000390625 mM -0.7 -0.7 -0.4 +0.4 -0.6
stress Cephalothin 0.01 mg/ml +0.1 -0.2 -0.4 -0.2 -1.0
nophagecontrol R1_N4_T1_phage0 -0.3 +0.2 +0.2 -0.4 -0.9
carbon source carbon source D-Glucose 0.25mM -0.2 +0.3 +0.3 +0.1 -1.6
motility inner cut, LB soft agar motility assay -0.2 -0.4 -0.3 +0.5 -0.6
stress LB Anaerobic with Benzethonium chloride 0.000015625 mM -0.5 -0.5 -0.4 +0.1 +0.5
motility outer cut, LB soft agar motility assay -1.4 +0.3 -0.8 +0.3 +1.2
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM +0.2 +0.8 +0.2 -0.2 -1.0
phage Papa dilution 10-1 cacl2 maltose +0.6 +0.4 +0.3 -0.4 -0.7
stress LB Anaerobic with Cephalothin 0.0000078125 mM +0.6 +0.6 +0.2 -0.5 -0.2
stress LB Anaerobic with Cephalothin 0.0000078125 mM +0.5 +0.4 +0.6 -0.5 -0.3
stress LB Anaerobic with Amoxicillin 0.0000078125 mM +0.8 +0.8 +0.6 -0.0 -1.3
carbon source Ying_Others16 rep B; time point 2 +0.3 +0.3 -0.5 +0.1 +1.0
stress LB Anaerobic with Amoxicillin 0.0000078125 mM +0.6 +0.8 +0.5 -0.3 -0.2
phage Ste41 +0.2 +0.4 +1.0 -0.2 +0.7
phage RB68 +0.6 +0.7 +0.3 +0.3 +0.6
phage Ste41 +0.7 +0.4 +0.3 +0.5 +0.6
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