Fitness for 5 genes in Escherichia coli BW25113

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500 ntyejH and rplY are separated by 124 nucleotidesrplY and yejK are separated by 138 nucleotidesyejK and yejL are separated by 181 nucleotidesyejL and yejM are separated by 19 nucleotides b2184: yejH - DNA damage response helicase (yejH or radD) (from data), at 2,278,654 to 2,280,414 yejH b2185: rplY - 50S ribosomal protein L25 (NCBI), at 2,280,539 to 2,280,823 rplY b2186: yejK - nucleoid-associated protein NdpA (NCBI), at 2,280,962 to 2,281,969 yejK b2187: yejL - hypothetical protein (NCBI), at 2,282,151 to 2,282,378 yejL b2188: yejM - predicted hydrolase, inner membrane (NCBI), at 2,282,398 to 2,284,158 yejM
Group Condition b2184 b2185 b2186 b2187 b2188
yejH rplY yejK yejL yejM
micoeukaryotes Tetrahymena sp., Mixed culture-1 +0.3 N.D. -0.4 -1.5 -7.7
carbon source Ying_OrganicAcid7 rep C; time point 3 -0.3 N.D. +0.3 -0.4 -8.3
carbon source Ying_OrganicAcid7 rep A; time point 3 -0.3 N.D. +0.1 -0.1 -8.4
carbon source Ying_OrganicAcid7 rep B; time point 3 +0.0 N.D. +0.2 -0.1 -8.5
carbon source Ying_sugar7 rep A; time point 3 +0.1 N.D. +0.4 -0.2 -8.0
carbon source Ying_sugar7 rep C; time point 3 +0.1 N.D. +0.5 -0.2 -7.7
carbon source Ying_sugar7 rep B; time point 3 -0.0 N.D. +0.4 +0.0 -7.8
carbon source Ying_sugar7 rep C; time point 2 -0.1 N.D. +0.4 -0.5 -6.8
carbon source D-Galactose (C) -0.2 N.D. +0.3 -1.3 -5.1
carbon source Ying_AminoAcid20 rep B; time point 3 -0.0 N.D. +0.0 +0.2 -6.4
carbon source acetate (C) -0.0 N.D. +0.2 -1.1 -5.2
stress LB Aerobic with Ramoplanin 0.000125 mM -0.2 N.D. -0.4 +0.0 -5.4
carbon source Ying_AminoAcid20 rep C; time point 3 -0.0 N.D. +0.2 -0.3 -5.9
nitrogen source L-Asparagine (N) -0.2 N.D. -0.1 -0.4 -5.2
carbon source acetate (C) -0.2 N.D. +0.3 -1.0 -4.9
stress M9 with Methotrexate 1.98 mM 24 hr -0.2 N.D. +0.2 -0.3 -5.5
carbon source Ying_OrganicAcid7 rep C; time point 2 +0.1 N.D. +0.1 -0.1 -5.7
carbon source D-Ribose (C) -0.2 N.D. +0.4 -1.1 -4.7
nutrient M9 Glucose 0.2%, Thauer's vit mix +0.2 N.D. +0.3 +0.1 -5.9
nutrient M9 Glucose 0.2%, Thauer's vit mix +0.1 N.D. +0.2 +0.2 -5.8
carbon source Ying_sugar7 rep A; time point 2 -0.1 N.D. +0.3 -0.1 -5.5
stress M9 with Methotrexate 0.1 mM 48 hr -0.0 N.D. +0.2 +0.2 -5.7
stress LB Aerobic with Spiramycin 0.000125 mM +0.1 N.D. -0.0 +0.3 -5.5
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x +0.2 N.D. -0.0 +0.4 -5.5
stress LB Anaerobic with Vancomycin Hydrochloride from Streptomyces orientalis 0.00003125 mM -0.0 N.D. -0.4 +1.0 -5.2
stress LB Anaerobic with Vancomycin Hydrochloride from Streptomyces orientalis 0.00003125 mM -0.1 N.D. -0.5 +1.3 -4.9
stress LB Anaerobic with Cephalothin 0.0000078125 mM -0.0 N.D. +1.7 -0.6 +3.7
stress LB Anaerobic with Cephalothin 0.0000078125 mM +0.1 N.D. +1.7 -0.6 +4.4
stress LB Anaerobic with Cefoxitin 0.000003125 mM -0.0 N.D. +0.8 +0.2 +5.4
stress LB Anaerobic with Cefoxitin 0.000003125 mM +0.6 N.D. +0.6 +0.6 +6.0
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