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Protein
Homologs
Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
yejH and rplY are separated by 124 nucleotides
rplY and yejK are separated by 138 nucleotides
yejK and yejL are separated by 181 nucleotides
yejL and yejM are separated by 19 nucleotides
b2184: yejH - DNA damage response helicase (yejH or radD)
(from data)
, at 2,278,654 to 2,280,414
yejH
b2185: rplY - 50S ribosomal protein L25 (NCBI), at 2,280,539 to 2,280,823
rplY
b2186: yejK - nucleoid-associated protein NdpA (NCBI), at 2,280,962 to 2,281,969
yejK
b2187: yejL - hypothetical protein (NCBI), at 2,282,151 to 2,282,378
yejL
b2188: yejM - predicted hydrolase, inner membrane (NCBI), at 2,282,398 to 2,284,158
yejM
Group
Condition
b2184
b2185
b2186
b2187
b2188
yejH
rplY
yejK
yejL
yejM
micoeukaryotes
Tetrahymena sp., Mixed culture-1
+0.3
N.D.
-0.4
-1.5
-7.7
carbon source
Ying_OrganicAcid7 rep C; time point 3
-0.3
N.D.
+0.3
-0.4
-8.3
carbon source
Ying_OrganicAcid7 rep A; time point 3
-0.3
N.D.
+0.1
-0.1
-8.4
carbon source
Ying_OrganicAcid7 rep B; time point 3
+0.0
N.D.
+0.2
-0.1
-8.5
carbon source
Ying_sugar7 rep A; time point 3
+0.1
N.D.
+0.4
-0.2
-8.0
carbon source
Ying_sugar7 rep C; time point 3
+0.1
N.D.
+0.5
-0.2
-7.7
carbon source
Ying_sugar7 rep B; time point 3
-0.0
N.D.
+0.4
+0.0
-7.8
carbon source
Ying_sugar7 rep C; time point 2
-0.1
N.D.
+0.4
-0.5
-6.8
carbon source
D-Galactose (C)
-0.2
N.D.
+0.3
-1.3
-5.1
carbon source
Ying_AminoAcid20 rep B; time point 3
-0.0
N.D.
+0.0
+0.2
-6.4
carbon source
acetate (C)
-0.0
N.D.
+0.2
-1.1
-5.2
stress
LB Aerobic with Ramoplanin 0.000125 mM
-0.2
N.D.
-0.4
+0.0
-5.4
carbon source
Ying_AminoAcid20 rep C; time point 3
-0.0
N.D.
+0.2
-0.3
-5.9
nitrogen source
L-Asparagine (N)
-0.2
N.D.
-0.1
-0.4
-5.2
carbon source
acetate (C)
-0.2
N.D.
+0.3
-1.0
-4.9
stress
M9 with Methotrexate 1.98 mM 24 hr
-0.2
N.D.
+0.2
-0.3
-5.5
carbon source
Ying_OrganicAcid7 rep C; time point 2
+0.1
N.D.
+0.1
-0.1
-5.7
carbon source
D-Ribose (C)
-0.2
N.D.
+0.4
-1.1
-4.7
nutrient
M9 Glucose 0.2%, Thauer's vit mix
+0.2
N.D.
+0.3
+0.1
-5.9
nutrient
M9 Glucose 0.2%, Thauer's vit mix
+0.1
N.D.
+0.2
+0.2
-5.8
carbon source
Ying_sugar7 rep A; time point 2
-0.1
N.D.
+0.3
-0.1
-5.5
stress
M9 with Methotrexate 0.1 mM 48 hr
-0.0
N.D.
+0.2
+0.2
-5.7
stress
LB Aerobic with Spiramycin 0.000125 mM
+0.1
N.D.
-0.0
+0.3
-5.5
supernatant
RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x
+0.2
N.D.
-0.0
+0.4
-5.5
stress
LB Anaerobic with Vancomycin Hydrochloride from Streptomyces orientalis 0.00003125 mM
-0.0
N.D.
-0.4
+1.0
-5.2
stress
LB Anaerobic with Vancomycin Hydrochloride from Streptomyces orientalis 0.00003125 mM
-0.1
N.D.
-0.5
+1.3
-4.9
stress
LB Anaerobic with Cephalothin 0.0000078125 mM
-0.0
N.D.
+1.7
-0.6
+3.7
stress
LB Anaerobic with Cephalothin 0.0000078125 mM
+0.1
N.D.
+1.7
-0.6
+4.4
stress
LB Anaerobic with Cefoxitin 0.000003125 mM
-0.0
N.D.
+0.8
+0.2
+5.4
stress
LB Anaerobic with Cefoxitin 0.000003125 mM
+0.6
N.D.
+0.6
+0.6
+6.0
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