Fitness for 5 genes in Escherichia coli BW25113

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500 ntyeiG and cirA are separated by 31 nucleotidescirA and lysP are separated by 293 nucleotideslysP and yeiE are separated by 204 nucleotidesyeiE and yeiH are separated by 98 nucleotides b2154: yeiG - predicted esterase (NCBI), at 2,241,932 to 2,242,768 yeiG b2155: cirA - ferric iron-catecholate outer membrane transporter (NCBI), at 2,242,800 to 2,244,791 cirA b2156: lysP - lysine transporter (NCBI), at 2,245,085 to 2,246,554 lysP b2157: yeiE - predicted DNA-binding transcriptional regulator (NCBI), at 2,246,759 to 2,247,640 yeiE b2158: yeiH - conserved inner membrane protein (NCBI), at 2,247,739 to 2,248,788 yeiH
Group Condition b2154 b2155 b2156 b2157 b2158
yeiG cirA lysP yeiE yeiH
phage Phage_N4_cage_3_mouse_1_Cecum_40 hr -0.1 -0.4 -1.8 -1.4 -3.3
control PBS_cage_2_mouse_1_Cecum_40 hr -0.3 -0.3 -1.5 -1.1 -3.5
control PBS_cage_2_mouse_2_Cecum_40 hr -0.5 +0.0 -1.7 -0.2 -3.9
control PBS_cage_2_mouse_3_Cecum_40 hr +0.1 +0.1 -1.5 -1.2 -3.3
control PBS_cage_2_mice _Feces_40 hr -0.4 +0.1 -1.3 -0.9 -3.4
phage Phage_N4_cage_4_mouse_3_Cecum_40 hr +0.4 -0.3 -1.0 -1.0 -3.9
phage Phage_N4_cage_3_mice _Feces_40 hr -0.1 +0.1 -1.5 -1.0 -2.9
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr +0.1 -0.1 -1.1 -1.2 -3.0
phage Phage_N4_cage_3_mouse_2_Cecum_40 hr +0.2 +0.1 -1.2 -1.4 -2.9
control PBS_cage_2_mice _Feces_22 hr -0.4 -0.0 -1.3 -0.7 -2.7
phage Phage_N4_cage_4_mice _Feces_40 hr +0.2 -0.2 -1.0 -0.8 -3.1
phage Phage_N4_cage_3_mice _Feces_22 hr -0.0 -0.2 -1.1 -0.9 -2.6
control PBS_cage_2_mice _Feces_16 hr +0.0 -0.0 -1.1 -0.7 -2.9
phage Phage_N4_cage_4_mouse_2_Cecum_40 hr +0.2 -0.4 -0.6 -1.2 -2.6
phage Phage_N4_cage_3_mice _Feces_16 hr -0.2 -0.0 -1.1 -0.7 -2.4
phage Phage_N4_cage_4_mouse_1_Cecum_40 hr +0.4 +0.1 -1.1 -1.1 -2.6
control PBS_cage_1_mouse_1_Cecum_40 hr +0.2 -0.2 -1.4 +0.0 -2.9
control PBS_cage_1_mouse_2_Cecum_40 hr -0.3 -0.2 -0.9 -0.4 -2.3
phage Phage_N4_cage_3_mouse_4_Cecum_40 hr +0.3 +0.0 -1.0 -0.6 -2.4
phage Phage_N4_cage_4_mice _Feces_22 hr +0.2 -0.1 -0.6 -0.6 -2.4
control PBS_cage_1_mice _Feces_40 hr +0.3 -0.1 -1.0 -0.6 -2.1
phage Phage_N4_cage_4_mice _Feces_16 hr +0.2 +0.0 -0.8 -0.3 -2.0
control PBS_cage_1_mice _Feces_22 hr +0.2 +0.2 -1.0 -0.2 -1.8
stress LB Anaerobic with Amoxicillin 0.0000078125 mM -0.4 -0.1 -1.9 -0.5 +0.4
phage RB68 -0.5 -0.8 -1.5 +0.2 +0.5
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM +0.4 -0.4 -2.5 +0.0 +0.5
stress LB Anaerobic with Amoxicillin 0.0000078125 mM -0.4 -0.5 -1.1 -0.6 +0.7
phage Ste41 +0.3 -1.4 -1.3 +0.9 +0.3
plasmid transformation mariner vector transformation; liquid outgrowth assay +0.5 +0.3 -2.0 -0.1 +0.2
stress 3-methyl-2-butenol 0.625 vol% -0.4 -0.0 +2.6 -0.2 -0.1
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