Fitness for 5 genes in Escherichia coli BW25113

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 1193 experiments or choose conditions or try the comparative fitness browser

500 ntrfbA and rfbD are separated by 57 nucleotidesrfbD and rfbB overlap by 1 nucleotidesrfbB and galF are separated by 372 nucleotidesgalF and wcaM are separated by 174 nucleotides b2039: rfbA - glucose-1-phosphate thymidylyltransferase (NCBI), at 2,108,162 to 2,109,043 rfbA b2040: rfbD - dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase (NCBI), at 2,109,101 to 2,110,000 rfbD b2041: rfbB - dTDP-glucose 4,6 dehydratase, NAD(P)-binding (NCBI), at 2,110,000 to 2,111,085 rfbB b2042: galF - predicted subunit with GalU (NCBI), at 2,111,458 to 2,112,351 galF b2043: wcaM - predicted colanic acid biosynthesis protein (NCBI), at 2,112,526 to 2,113,920 wcaM
Group Condition b2039 b2040 b2041 b2042 b2043
rfbA rfbD rfbB galF wcaM
phage T7_phage 0.00015625 MOI TC2 -0.3 -5.9 -0.9 -0.9 +0.1
phage T7_phage 0.000015625 MOI TC3 -0.0 -6.1 -0.3 -0.4 +0.0
phage T7_phage 0.000015625 MOI TC4 -0.1 -6.3 -0.1 -0.2 +0.1
phage T7_phage 0.00015625 MOI TC1 -0.1 -6.1 -0.2 -0.1 -0.0
phage T7_phage 0.000015625 MOI TC1 -0.0 -6.1 -0.1 -0.1 -0.1
phage T7_phage 0.000015625 MOI TC2 -0.2 -5.8 -0.1 -0.2 +0.1
phage T7_phage 0.000015625 MOI TC5 -0.0 -6.4 +0.1 +0.1 -0.0
phage T7_phage 0.0015625 MOI TC1 +0.2 -5.0 -0.6 -0.8 +0.1
phage T7_phage_31.25_MOI +0.1 -6.2 +0.1 +0.2 +0.0
phage phage +0.2 -5.0 +0.1 -0.0 -0.2
phage T7_phage 0.0000015625 MOI TC5 -0.1 -4.2 +0.0 -0.0 -0.1
phage T7_phage 0.00015625 MOI TC4 +0.8 -4.3 -0.3 -0.5 +0.1
phage T7_phage_3.125_MOI -0.0 -3.9 +0.2 +0.1 +0.1
stress Benzalkonium Chloride 0.004 mg/ml +0.9 -3.0 -1.5 -0.0 +0.2
phage T7_phage 0.0015625 MOI TC2 +0.2 -2.0 -0.4 -0.4 -0.1
phage T7_phage 0.00015625 MOI TC3 +0.3 -1.7 -0.1 -1.0 +0.2
phage Phage_N4_cage_3_mouse_1_Cecum_40 hr -0.1 -1.9 +0.1 -0.3 +0.3
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM +0.9 -1.6 -1.6 +0.4 +0.1
plasmid transformation vcDART vector transformation; liquid outgrowth assay -1.6 +0.4 +0.1 -0.4 +0.1
plasmid transformation mariner vector transformation; liquid outgrowth assay -1.9 +0.4 +0.3 +0.1 +0.1
plasmid transformation mariner vector transformation; liquid outgrowth assay -1.7 +0.6 +0.1 +0.1 -0.0
plasmid transformation vcDART vector transformation; liquid outgrowth assay -1.8 +0.2 +0.3 +0.5 -0.1
control PBS_cage_2_mouse_3_Cecum_40 hr +0.1 -1.6 +0.1 +0.4 +0.2
stress octanol 0.08 vol% +1.5 -1.2 -0.2 +0.4 -0.4
plasmid transformation mariner vector transformation; liquid outgrowth assay -1.2 +0.5 +0.5 +0.4 -0.0
plasmid transformation vcDART vector transformation; liquid outgrowth assay -1.7 +0.8 +0.6 +0.7 -0.2
stress Bacitracin 1 mg/ml +1.4 -0.4 -0.9 +1.0 -0.0
stress Trimethoprim 0.00125 mM -2.6 +2.1 +1.7 +1.0 +0.0
stress Trimethoprim 0.005 mM -0.6 +1.3 +0.7 +0.5 +0.3
stress Trimethoprim 0.0025 mM -2.4 +2.1 +1.9 +1.1 +0.1
remove
b2039
plot		 remove
b2040
plot		 remove
b2041		 remove
b2042
plot		 remove
b2043
plot