Fitness for 5 genes in Escherichia coli BW25113

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500 ntrfbX and rfbC overlap by 4 nucleotidesrfbC and rfbA overlap by 1 nucleotidesrfbA and rfbD are separated by 57 nucleotidesrfbD and rfbB overlap by 1 nucleotides b2037: rfbX - predicted polisoprenol-linked O-antigen transporter (NCBI), at 2,106,361 to 2,107,608 rfbX b2038: rfbC - dTDP-4-deoxyrhamnose-3,5-epimerase (NCBI), at 2,107,605 to 2,108,162 rfbC b2039: rfbA - glucose-1-phosphate thymidylyltransferase (NCBI), at 2,108,162 to 2,109,043 rfbA b2040: rfbD - dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase (NCBI), at 2,109,101 to 2,110,000 rfbD b2041: rfbB - dTDP-glucose 4,6 dehydratase, NAD(P)-binding (NCBI), at 2,110,000 to 2,111,085 rfbB
Group Condition b2037 b2038 b2039 b2040 b2041
rfbX rfbC rfbA rfbD rfbB
phage T7_phage 0.00015625 MOI TC2 -4.6 -6.5 -0.3 -5.9 -0.9
phage T7_phage 0.000015625 MOI TC3 -1.4 -6.4 -0.0 -6.1 -0.3
phage T7_phage 0.000015625 MOI TC2 -1.0 -6.4 -0.2 -5.8 -0.1
phage T7_phage 0.0015625 MOI TC1 -2.5 -5.4 +0.2 -5.0 -0.6
phage T7_phage 0.00015625 MOI TC1 -0.6 -6.3 -0.1 -6.1 -0.2
phage T7_phage 0.000015625 MOI TC4 -0.5 -6.1 -0.1 -6.3 -0.1
phage T7_phage 0.000015625 MOI TC5 -0.2 -6.5 -0.0 -6.4 +0.1
phage T7_phage 0.000015625 MOI TC1 -0.4 -6.3 -0.0 -6.1 -0.1
phage T7_phage_31.25_MOI +0.1 -6.6 +0.1 -6.2 +0.1
phage T7_phage 0.00015625 MOI TC4 -2.6 -4.8 +0.8 -4.3 -0.3
phage phage -0.4 -5.4 +0.2 -5.0 +0.1
phage T7_phage_3.125_MOI +0.0 -5.9 -0.0 -3.9 +0.2
phage T7_phage 0.0000015625 MOI TC5 -0.2 -4.7 -0.1 -4.2 +0.0
phage T7_phage 0.0015625 MOI TC2 -1.1 -3.6 +0.2 -2.0 -0.4
stress Benzalkonium Chloride 0.004 mg/ml +1.5 -2.8 +0.9 -3.0 -1.5
phage T7_phage 0.00015625 MOI TC3 -1.0 -2.4 +0.3 -1.7 -0.1
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM -0.6 -1.5 +0.9 -1.6 -1.6
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr -0.5 -2.0 -0.2 -1.4 +0.1
phage Phage_N4_cage_3_mouse_1_Cecum_40 hr -0.1 -2.0 -0.1 -1.9 +0.1
plasmid transformation mariner vector transformation; liquid outgrowth assay -2.9 +0.7 -1.7 +0.6 +0.1
plasmid transformation mariner vector transformation; liquid outgrowth assay -2.3 +0.3 -1.9 +0.4 +0.3
plasmid transformation vcDART vector transformation; liquid outgrowth assay -2.7 +0.7 -1.6 +0.4 +0.1
plasmid transformation vcDART vector transformation; liquid outgrowth assay -2.0 +1.0 -1.8 +0.2 +0.3
plasmid transformation mariner vector transformation; liquid outgrowth assay -2.3 +0.6 -1.2 +0.5 +0.5
plasmid transformation vcDART vector transformation; liquid outgrowth assay -1.9 +1.0 -1.7 +0.8 +0.6
stress octanol 0.08 vol% +0.7 -1.6 +1.5 -1.2 -0.2
stress Trimethoprim 0.00125 mM -3.4 +1.5 -2.6 +2.1 +1.7
stress Spectinomycin 0.0125 mg/ml -2.1 +1.0 -0.3 +0.6 +0.2
stress Trimethoprim 0.0025 mM -2.7 +1.4 -2.4 +2.1 +1.9
stress Bacitracin 1 mg/ml +1.6 -0.6 +1.4 -0.4 -0.9
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