Fitness for 5 genes in Escherichia coli BW25113

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500 ntyedS and hchA are separated by 591 nucleotideshchA and yedV are separated by 107 nucleotidesyedV and yedW overlap by 1 nucleotidesyedW and yedX are separated by 132 nucleotides b4496: yedS - no description, at 2,032,075 to 2,033,267 yedS b1967: hchA - chaperone protein HchA (NCBI), at 2,033,859 to 2,034,710 hchA b1968: yedV - predicted sensory kinase in two-component regulatory system with YedW (NCBI), at 2,034,818 to 2,036,176 yedV b1969: yedW - putative 2-component transcriptional regulator (VIMSS), at 2,036,176 to 2,036,847 yedW b1970: yedX - hypothetical protein (NCBI), at 2,036,980 to 2,037,393 yedX
Group Condition b4496 b1967 b1968 b1969 b1970
yedS hchA yedV yedW yedX
control PBS_cage_1_mice _Feces_16 hr -0.5 -0.4 -2.0 -1.3 -0.2
M9 Glucose 2% aerobic -0.0 -0.2 -1.6 -1.0 -0.7
M9 Glucose 2% anaerobic -0.0 -0.3 -1.4 -0.9 -0.8
M9 Acetate 0.5% aerobic -0.1 -0.3 -1.3 -1.0 -0.5
M9 Glucose 2%, 20 mM NO3- anaerobic -0.1 -0.2 -1.0 -0.8 -0.9
control PBS_cage_1_mouse_2_Cecum_40 hr -0.1 -0.1 -2.1 -0.6 +0.0
M9 Glucose 2% aerobic -0.0 -0.1 -1.1 -0.8 -0.8
M9 Acetate 0.5% aerobic -0.0 -0.2 -1.1 -0.9 -0.5
control PBS_cage_1_mice _Feces_22 hr -0.3 -0.4 -0.3 -1.2 -0.3
nopredatorcontrol 3 hr NoPredatorControl +0.0 -0.2 -0.9 -1.1 -0.4
stress LB Aerobic with Ramoplanin 0.000125 mM -0.3 -0.1 -0.3 -1.2 -0.5
predation 3 hr rep1_HD100_10fold_dilution -0.0 -0.2 -0.9 -1.0 -0.3
stress LB Aerobic with Benzethonium chloride 0.000015625 mM -0.1 -0.2 -0.7 -0.8 -0.6
stress LB Anaerobic with Nitrofurantoin 0.000015625 mM +0.0 -0.2 -0.5 -0.5 -1.2
stress LB Anaerobic with Spiramycin 0.000125 mM -0.2 -0.1 -0.6 -1.2 -0.3
stress LB Anaerobic with 2-Mercaptopyridine N-oxide 0.000015625 mM -0.0 -0.2 -0.6 -0.2 -1.3
control PBS_cage_1_mouse_1_Cecum_40 hr -0.5 -0.1 +0.0 -1.3 -0.4
control PBS_cage_1_mice _Feces_40 hr -0.4 -0.2 -0.3 -1.3 +0.0
carbon source carbon source D-Mannose 1mM +0.4 -0.1 -1.4 -0.4 -0.1
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.1 -0.4 +0.7 -1.6 +0.1
carbon source carbon source D-Glucose 20mM +0.1 -0.2 +0.4 -1.0 -0.5
stress Cisplatin 0.1 mg/ml +0.5 -0.1 -1.2 -0.0 -0.4
phage N4_phage 0.00009375 MOI TC4 -0.2 +0.2 +1.5 -0.1 -1.0
phage Ste41 -0.3 -0.4 +0.8 -0.2 +1.1
phage Ste41 +0.2 -0.4 +1.0 +0.1 +1.1
stress M9 with Methotrexate 1.98 mM 24 hr -0.1 +0.1 +1.2 +0.7 +0.2
stress LB Aerobic with Irgasan 0.0000003125 mM +0.0 +0.2 +1.2 +0.8 +0.0
phage Papa dilution 10-1 cacl2 maltose -0.1 +0.1 +1.9 +1.0 +0.3
stress Trimethoprim 0.005 mM -0.2 +0.4 +1.9 +0.7 +0.8
phage N4_phage 0.009375 MOI TC2 +0.0 +0.2 +1.9 +0.9 +0.7
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