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Protein
Homologs
Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
yedS and hchA are separated by 591 nucleotides
hchA and yedV are separated by 107 nucleotides
yedV and yedW overlap by 1 nucleotides
yedW and yedX are separated by 132 nucleotides
b4496: yedS - no description, at 2,032,075 to 2,033,267
yedS
b1967: hchA - chaperone protein HchA (NCBI), at 2,033,859 to 2,034,710
hchA
b1968: yedV - predicted sensory kinase in two-component regulatory system with YedW (NCBI), at 2,034,818 to 2,036,176
yedV
b1969: yedW - putative 2-component transcriptional regulator (VIMSS), at 2,036,176 to 2,036,847
yedW
b1970: yedX - hypothetical protein (NCBI), at 2,036,980 to 2,037,393
yedX
Group
Condition
b4496
b1967
b1968
b1969
b1970
yedS
hchA
yedV
yedW
yedX
control
PBS_cage_1_mice _Feces_16 hr
-0.5
-0.4
-2.0
-1.3
-0.2
M9 Glucose 2% aerobic
-0.0
-0.2
-1.6
-1.0
-0.7
M9 Glucose 2% anaerobic
-0.0
-0.3
-1.4
-0.9
-0.8
M9 Acetate 0.5% aerobic
-0.1
-0.3
-1.3
-1.0
-0.5
M9 Glucose 2%, 20 mM NO3- anaerobic
-0.1
-0.2
-1.0
-0.8
-0.9
control
PBS_cage_1_mouse_2_Cecum_40 hr
-0.1
-0.1
-2.1
-0.6
+0.0
M9 Glucose 2% aerobic
-0.0
-0.1
-1.1
-0.8
-0.8
M9 Acetate 0.5% aerobic
-0.0
-0.2
-1.1
-0.9
-0.5
control
PBS_cage_1_mice _Feces_22 hr
-0.3
-0.4
-0.3
-1.2
-0.3
nopredatorcontrol
3 hr NoPredatorControl
+0.0
-0.2
-0.9
-1.1
-0.4
stress
LB Aerobic with Ramoplanin 0.000125 mM
-0.3
-0.1
-0.3
-1.2
-0.5
predation
3 hr rep1_HD100_10fold_dilution
-0.0
-0.2
-0.9
-1.0
-0.3
stress
LB Aerobic with Benzethonium chloride 0.000015625 mM
-0.1
-0.2
-0.7
-0.8
-0.6
stress
LB Anaerobic with Nitrofurantoin 0.000015625 mM
+0.0
-0.2
-0.5
-0.5
-1.2
stress
LB Anaerobic with Spiramycin 0.000125 mM
-0.2
-0.1
-0.6
-1.2
-0.3
stress
LB Anaerobic with 2-Mercaptopyridine N-oxide 0.000015625 mM
-0.0
-0.2
-0.6
-0.2
-1.3
control
PBS_cage_1_mouse_1_Cecum_40 hr
-0.5
-0.1
+0.0
-1.3
-0.4
control
PBS_cage_1_mice _Feces_40 hr
-0.4
-0.2
-0.3
-1.3
+0.0
carbon source
carbon source D-Mannose 1mM
+0.4
-0.1
-1.4
-0.4
-0.1
micoeukaryotes
Tetrahymena sp., Mixed culture-1
-0.1
-0.4
+0.7
-1.6
+0.1
carbon source
carbon source D-Glucose 20mM
+0.1
-0.2
+0.4
-1.0
-0.5
stress
Cisplatin 0.1 mg/ml
+0.5
-0.1
-1.2
-0.0
-0.4
phage
N4_phage 0.00009375 MOI TC4
-0.2
+0.2
+1.5
-0.1
-1.0
phage
Ste41
-0.3
-0.4
+0.8
-0.2
+1.1
phage
Ste41
+0.2
-0.4
+1.0
+0.1
+1.1
stress
M9 with Methotrexate 1.98 mM 24 hr
-0.1
+0.1
+1.2
+0.7
+0.2
stress
LB Aerobic with Irgasan 0.0000003125 mM
+0.0
+0.2
+1.2
+0.8
+0.0
phage
Papa dilution 10-1 cacl2 maltose
-0.1
+0.1
+1.9
+1.0
+0.3
stress
Trimethoprim 0.005 mM
-0.2
+0.4
+1.9
+0.7
+0.8
phage
N4_phage 0.009375 MOI TC2
+0.0
+0.2
+1.9
+0.9
+0.7
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