Fitness for 5 genes in Escherichia coli BW25113

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500 ntpykA and lpxM are separated by 130 nucleotideslpxM and yebA are separated by 119 nucleotidesyebA and yebL are separated by 15 nucleotidesyebL and znuC are separated by 78 nucleotides b1854: pykA - pyruvate kinase (NCBI), at 1,935,673 to 1,937,115 pykA b1855: lpxM - lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI), at 1,937,246 to 1,938,217 lpxM b1856: yebA - orf, hypothetical protein (VIMSS), at 1,938,337 to 1,939,659 yebA b1857: yebL - putative adhesin (VIMSS), at 1,939,675 to 1,940,607 yebL b1858: znuC - high-affinity zinc transporter ATPase (NCBI), at 1,940,686 to 1,941,441 znuC
Group Condition b1854 b1855 b1856 b1857 b1858
pykA lpxM yebA yebL znuC
carbon source Glycolic Acid (C) -4.7 -2.3 -0.3 -3.5 -3.7
carbon source Glycolic Acid (C) -3.4 -1.6 -0.3 -3.1 -3.4
phage Phage_N4_cage_4_mouse_1_Cecum_40 hr +0.4 -9.3 -0.5 -0.9 -0.4
carbon source L-Malic (C) -1.7 -3.3 +0.0 -2.8 -2.3
control PBS_cage_1_mice _Feces_40 hr +0.1 -8.8 -0.1 -0.8 -0.4
phage Phage_N4_cage_3_mice _Feces_40 hr +0.4 -9.4 +0.0 -0.4 -0.3
control PBS_cage_2_mouse_1_Cecum_40 hr +0.3 -8.7 -0.2 -1.4 +0.3
carbon source succinate (C) -1.8 -2.5 -0.2 -2.6 -2.7
control PBS_cage_1_mice _Feces_22 hr -0.1 -8.1 -0.3 -0.7 -0.4
phage Phage_N4_cage_3_mouse_4_Cecum_40 hr +0.7 -8.9 -0.3 -0.8 -0.0
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr +1.0 -8.9 -0.0 -0.9 -0.3
carbon source succinate (C) -1.7 -2.6 -0.3 -2.3 -2.1
carbon source L-Malic (C) -1.6 -3.2 -0.0 -2.2 -1.9
phage Phage_N4_cage_3_mouse_1_Cecum_40 hr +0.5 -8.7 -0.1 -0.0 -0.5
control PBS_cage_2_mice _Feces_40 hr +0.5 -8.8 +0.2 -0.8 +0.2
phage Phage_N4_cage_4_mice _Feces_40 hr +0.6 -7.8 -0.1 -0.5 -0.4
phage Phage_N4_cage_3_mouse_2_Cecum_40 hr +0.8 -7.6 -0.2 -0.3 -0.5
stress octanol 0.08 vol% +0.2 -6.4 +0.4 -1.2 -0.6
control PBS_cage_1_mouse_2_Cecum_40 hr -0.3 -5.9 -0.0 -0.4 -0.8
phage Phage_N4_cage_3_mice _Feces_16 hr +0.1 -6.6 -0.2 -0.1 -0.7
phage Phage_N4_cage_4_mice _Feces_22 hr +0.2 -7.0 +0.1 -0.3 -0.4
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.1 -1.3 +0.2 -3.1 -2.8
control PBS_cage_2_mouse_3_Cecum_40 hr +0.5 -6.3 +0.0 -1.4 -0.1
carbon source a-Ketoglutaric (C) +0.1 -1.3 +0.2 -2.8 -3.3
phage Phage_N4_cage_4_mouse_3_Cecum_40 hr +0.7 -6.7 -0.2 -0.4 -0.1
control PBS_cage_2_mice _Feces_22 hr +0.2 -6.5 -0.1 -0.7 +0.3
stress LB Aerobic with Ramoplanin 0.000125 mM -0.3 -4.5 -4.9 +1.7 +1.4
control PBS_cage_2_mouse_2_Cecum_40 hr +0.8 -6.2 +0.0 -1.0 -0.1
stress LB Aerobic with Ramoplanin 0.000125 mM -0.3 -5.1 -3.9 +1.9 +1.2
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM +1.2 -4.4 -1.1 -0.5 -0.5
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