Fitness for 5 genes in Escherichia coli BW25113

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500 ntpurT and eda are separated by 55 nucleotideseda and edd are separated by 36 nucleotidesedd and zwf are separated by 234 nucleotideszwf and yebK are separated by 337 nucleotides b1849: purT - phosphoribosylglycinamide formyltransferase 2 (NCBI), at 1,928,905 to 1,930,083 purT b1850: eda - keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI), at 1,930,139 to 1,930,780 eda b1851: edd - phosphogluconate dehydratase (NCBI), at 1,930,817 to 1,932,628 edd b1852: zwf - glucose-6-phosphate 1-dehydrogenase (NCBI), at 1,932,863 to 1,934,338 zwf b1853: yebK - predicted DNA-binding transcriptional regulator (NCBI), at 1,934,676 to 1,935,545 yebK
Group Condition b1849 b1850 b1851 b1852 b1853
purT eda edd zwf yebK
control PBS_cage_1_mouse_1_Cecum_40 hr -1.0 -6.9 -0.7 N.D. +0.9
phage Phage_N4_cage_4_mice _Feces_16 hr -0.2 -7.4 -0.6 N.D. +0.5
phage Phage_N4_cage_3_mice _Feces_16 hr -0.0 -7.5 -0.6 N.D. +0.8
control PBS_cage_2_mice _Feces_22 hr -0.2 -7.1 -0.5 N.D. +0.7
phage Phage_N4_cage_3_mice _Feces_40 hr +0.1 -7.6 -0.6 N.D. +1.0
control PBS_cage_2_mice _Feces_16 hr +0.0 -7.3 -0.5 N.D. +0.8
phage Phage_N4_cage_4_mice _Feces_22 hr -0.0 -7.5 -0.6 N.D. +1.1
phage Phage_N4_cage_3_mice _Feces_22 hr -0.1 -7.5 -0.4 N.D. +0.9
control PBS_cage_2_mouse_1_Cecum_40 hr -0.0 -6.8 -0.7 N.D. +0.6
carbon source carbon source D-Glucose 1mM +0.4 -6.7 +0.1 N.D. -0.4
carbon source carbon source D-Glucose 0.25mM +0.4 -6.0 -0.3 N.D. -0.6
control PBS_cage_1_mice _Feces_22 hr +0.2 -6.9 -0.3 N.D. +0.5
phage Phage_N4_cage_3_mouse_2_Cecum_40 hr +0.1 -7.4 -0.5 N.D. +1.3
control PBS_cage_2_mouse_3_Cecum_40 hr -0.1 -6.8 -0.8 N.D. +1.3
phage Phage_N4_cage_4_mouse_3_Cecum_40 hr +0.1 -7.4 -0.6 N.D. +1.5
control PBS_cage_1_mice _Feces_16 hr +0.6 -6.4 -0.7 N.D. +0.1
phage Phage_N4_cage_3_mouse_1_Cecum_40 hr -0.1 -7.3 -0.3 N.D. +1.3
control PBS_cage_1_mice _Feces_40 hr -0.0 -6.9 -0.5 N.D. +1.2
control PBS_cage_1_mouse_2_Cecum_40 hr +0.2 -7.2 -0.7 N.D. +1.6
phage Phage_N4_cage_4_mice _Feces_40 hr -0.0 -7.5 -0.6 N.D. +2.1
control PBS_cage_2_mouse_2_Cecum_40 hr -0.0 -6.8 -0.4 N.D. +1.1
control PBS_cage_2_mice _Feces_40 hr -0.0 -6.9 -0.4 N.D. +1.4
phage Phage_N4_cage_3_mouse_4_Cecum_40 hr +0.7 -7.1 -0.5 N.D. +0.9
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr +0.2 -7.1 -0.4 N.D. +1.7
carbon source carbon source D-Glucose 0.25mM +0.2 -6.2 -0.3 N.D. +0.9
phage Phage_N4_cage_4_mouse_2_Cecum_40 hr +0.2 -7.2 -0.6 N.D. +2.3
motility inner cut, LB soft agar motility assay +0.1 -6.2 +0.1 N.D. +0.9
motility outer cut, LB soft agar motility assay -0.3 -5.7 -0.1 N.D. +1.0
carbon source carbon source D-Glucose 5mM +0.5 -5.9 +0.2 N.D. +0.5
phage Phage_N4_cage_4_mouse_1_Cecum_40 hr -0.5 -5.0 -0.6 N.D. +1.8
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