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Protein
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Fitness for 5 genes in
Escherichia coli BW25113
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
yeaE and mipA are separated by 89 nucleotides
mipA and yeaG are separated by 435 nucleotides
yeaG and yeaH are separated by 112 nucleotides
yeaH and yeaI are separated by 146 nucleotides
b1781: yeaE - predicted oxidoreductase (NCBI), at 1,862,806 to 1,863,660
yeaE
b1782: mipA - scaffolding protein for murein synthesizing machinery (NCBI), at 1,863,750 to 1,864,496
mipA
b1783: yeaG - yeaG component of nitrogen-related signalling system (of yeaGH-ycgB)
(from data)
, at 1,864,932 to 1,866,866
yeaG
b1784: yeaH - yeaH component of nitrogen-related signalling system (of yeaGH-ycgB)
(from data)
, at 1,866,979 to 1,868,262
yeaH
b1785: yeaI - predicted diguanylate cyclase (NCBI), at 1,868,409 to 1,869,884
yeaI
Group
Condition
b1781
b1782
b1783
b1784
b1785
yeaE
mipA
yeaG
yeaH
yeaI
carbon source
Ying_Nucleobase14 rep A; time point 3
-0.3
+0.0
-3.6
-2.7
-0.4
carbon source
Ying_Nucleobase14 rep B; time point 3
-0.3
-0.1
-3.4
-2.5
-0.2
carbon source
Ying_Nucleobase14 rep C; time point 3
-0.1
-0.2
-2.8
-3.0
-0.3
carbon source
Ying_Nucleobase14 rep C; time point 2
-0.1
+0.0
-2.7
-3.2
-0.4
carbon source
Ying_Nucleobase14 rep A; time point 2
-0.3
+0.1
-2.9
-2.9
+0.1
carbon source
carbon source D-Mannose 0.5mM
-0.1
-0.4
-1.7
-1.9
-1.4
carbon source
Ying_Nucleobase14 rep B; time point 2
-0.0
-0.1
-2.5
-2.5
-0.3
stress
LB Aerobic with Ramoplanin 0.000125 mM
-0.5
-3.5
-0.3
-0.3
-0.7
stress
Benzalkonium Chloride 0.004 mg/ml
-0.1
-3.8
-0.9
+0.2
-0.4
stress
LB Aerobic with Ramoplanin 0.000125 mM
-0.2
-4.0
+0.2
+0.1
-0.7
stress
LB Anaerobic with Benzethonium chloride 0.00003125 mM
+0.4
-4.2
-0.8
+0.1
+0.0
carbon source
carbon source D-Glucose 0.25mM
-0.3
-0.5
-1.0
-1.2
-1.2
carbon source
carbon source D-Glucose 0.25mM
+0.4
-0.3
-1.6
-1.0
-1.7
carbon source
Ying_Others16 rep B; time point 2
+0.3
-0.2
-1.5
-1.9
-0.9
carbon source
Ying_Nucleobase14 rep C; time point 1
-0.1
-0.0
-1.9
-1.5
-0.5
carbon source
Ying_Nucleobase14 rep A; time point 1
-0.3
+0.2
-1.8
-1.8
-0.3
carbon source
Ying_Others16 rep A; time point 2
-0.1
-0.1
-1.6
-1.6
-0.5
carbon source
carbon source D-Glucose 1mM
+0.0
-0.3
-1.6
-1.2
-0.6
carbon source
Uridine 0.4095 mM (C)
+0.0
+0.0
-1.7
-1.3
-0.5
carbon source
Ying_Nucleobase14 rep B; time point 1
+0.2
-0.2
-1.7
-1.6
-0.2
carbon source
carbon source D-Glucose 0.5mM
-0.2
-0.4
-1.4
-1.4
+0.0
carbon source
carbon source D-Glucose 0.5mM
-0.3
-0.4
-1.2
-1.0
-0.4
carbon source
Uridine 0.4095 mM (C)
-0.1
+0.4
-1.3
-1.5
-0.3
plasmid transformation
vcDART vector transformation; liquid outgrowth assay
-0.7
-0.5
-0.6
-0.5
+1.1
carbon source
Ying_AminoAcid20 rep C; time point 3
+0.2
-0.1
+1.4
+1.2
-0.6
control
PBS_cage_1_mouse_1_Cecum_40 hr
+0.3
-1.1
+0.3
+0.7
+1.9
carbon source
Acetate (C)
+0.1
-0.1
+1.6
+1.5
-0.1
carbon source
Acetate (C)
+0.0
+0.4
+1.7
+1.6
+0.3
nitrogen source
L-Arginine (N)
-0.5
+1.1
+4.3
+4.1
-0.1
nitrogen source
L-Arginine (N)
+0.4
+1.0
+4.4
+4.2
-0.3
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