Fitness for 5 genes in Escherichia coli BW25113

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500 ntyeaE and mipA are separated by 89 nucleotidesmipA and yeaG are separated by 435 nucleotidesyeaG and yeaH are separated by 112 nucleotidesyeaH and yeaI are separated by 146 nucleotides b1781: yeaE - predicted oxidoreductase (NCBI), at 1,862,806 to 1,863,660 yeaE b1782: mipA - scaffolding protein for murein synthesizing machinery (NCBI), at 1,863,750 to 1,864,496 mipA b1783: yeaG - yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data), at 1,864,932 to 1,866,866 yeaG b1784: yeaH - yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data), at 1,866,979 to 1,868,262 yeaH b1785: yeaI - predicted diguanylate cyclase (NCBI), at 1,868,409 to 1,869,884 yeaI
Group Condition b1781 b1782 b1783 b1784 b1785
yeaE mipA yeaG yeaH yeaI
carbon source Ying_Nucleobase14 rep A; time point 3 -0.3 +0.0 -3.6 -2.7 -0.4
carbon source Ying_Nucleobase14 rep B; time point 3 -0.3 -0.1 -3.4 -2.5 -0.2
carbon source Ying_Nucleobase14 rep C; time point 3 -0.1 -0.2 -2.8 -3.0 -0.3
carbon source Ying_Nucleobase14 rep C; time point 2 -0.1 +0.0 -2.7 -3.2 -0.4
carbon source Ying_Nucleobase14 rep A; time point 2 -0.3 +0.1 -2.9 -2.9 +0.1
carbon source carbon source D-Mannose 0.5mM -0.1 -0.4 -1.7 -1.9 -1.4
carbon source Ying_Nucleobase14 rep B; time point 2 -0.0 -0.1 -2.5 -2.5 -0.3
stress LB Aerobic with Ramoplanin 0.000125 mM -0.5 -3.5 -0.3 -0.3 -0.7
stress Benzalkonium Chloride 0.004 mg/ml -0.1 -3.8 -0.9 +0.2 -0.4
stress LB Aerobic with Ramoplanin 0.000125 mM -0.2 -4.0 +0.2 +0.1 -0.7
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM +0.4 -4.2 -0.8 +0.1 +0.0
carbon source carbon source D-Glucose 0.25mM -0.3 -0.5 -1.0 -1.2 -1.2
carbon source carbon source D-Glucose 0.25mM +0.4 -0.3 -1.6 -1.0 -1.7
carbon source Ying_Others16 rep B; time point 2 +0.3 -0.2 -1.5 -1.9 -0.9
carbon source Ying_Nucleobase14 rep C; time point 1 -0.1 -0.0 -1.9 -1.5 -0.5
carbon source Ying_Nucleobase14 rep A; time point 1 -0.3 +0.2 -1.8 -1.8 -0.3
carbon source Ying_Others16 rep A; time point 2 -0.1 -0.1 -1.6 -1.6 -0.5
carbon source carbon source D-Glucose 1mM +0.0 -0.3 -1.6 -1.2 -0.6
carbon source Uridine 0.4095 mM (C) +0.0 +0.0 -1.7 -1.3 -0.5
carbon source Ying_Nucleobase14 rep B; time point 1 +0.2 -0.2 -1.7 -1.6 -0.2
carbon source carbon source D-Glucose 0.5mM -0.2 -0.4 -1.4 -1.4 +0.0
carbon source carbon source D-Glucose 0.5mM -0.3 -0.4 -1.2 -1.0 -0.4
carbon source Uridine 0.4095 mM (C) -0.1 +0.4 -1.3 -1.5 -0.3
plasmid transformation vcDART vector transformation; liquid outgrowth assay -0.7 -0.5 -0.6 -0.5 +1.1
carbon source Ying_AminoAcid20 rep C; time point 3 +0.2 -0.1 +1.4 +1.2 -0.6
control PBS_cage_1_mouse_1_Cecum_40 hr +0.3 -1.1 +0.3 +0.7 +1.9
carbon source Acetate (C) +0.1 -0.1 +1.6 +1.5 -0.1
carbon source Acetate (C) +0.0 +0.4 +1.7 +1.6 +0.3
nitrogen source L-Arginine (N) -0.5 +1.1 +4.3 +4.1 -0.1
nitrogen source L-Arginine (N) +0.4 +1.0 +4.4 +4.2 -0.3
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