Fitness for 5 genes in Escherichia coli BW25113

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500 ntpfkB and ydiZ are separated by 100 nucleotidesydiZ and yniA are separated by 105 nucleotidesyniA and yniB are separated by 40 nucleotidesyniB and yniC are separated by 146 nucleotides b1723: pfkB - 6-phosphofructokinase II; suppressor of pfkA (VIMSS), at 1,804,394 to 1,805,323 pfkB b1724: ydiZ - hypothetical protein (NCBI), at 1,805,424 to 1,805,714 ydiZ b1725: yniA - predicted phosphotransferase/kinase (NCBI), at 1,805,820 to 1,806,680 yniA b1726: yniB - predicted inner membrane protein (NCBI), at 1,806,721 to 1,807,257 yniB b1727: yniC - predicted hydrolase (NCBI), at 1,807,404 to 1,808,072 yniC
Group Condition b1723 b1724 b1725 b1726 b1727
pfkB ydiZ yniA yniB yniC
nophagecontrol R1_N4_T1_phage0 -0.4 -1.7 -0.2 -0.5 -2.8
carbon source D-Glucosamine Hydrochloride (C) -0.2 -1.5 +0.3 +0.2 -3.4
carbon source carbon source D-Mannose 0.5mM -0.3 -0.7 +0.0 -3.6 +0.1
mzaabcde mzaABCDE -0.3 -0.6 -0.2 -3.4 +0.1
mzaabcde mzaABCDE -0.1 -1.3 -0.6 -2.0 -0.2
phage Δdbn_10 +0.4 +0.5 +0.2 -0.3 -4.5
stress LB Anaerobic with Ampicillin 0.00000195313 mM +0.2 -1.0 -0.5 -1.7 -0.6
stress Chlorite 1.25 mM +0.0 -0.3 -0.7 -0.1 -2.3
stress methylglyoxal 0.008 vol% +0.2 -1.4 -0.3 -1.7 -0.2
predation 6 hr rep2_HD100_10fold_dilution_grewON +0.4 -0.5 +0.0 -2.6 -0.6
gfp_control GFP_control +0.1 -2.1 +0.1 -1.2 -0.1
carbon source carbon source D-Mannose 0.5mM -0.3 -0.7 -0.3 -2.0 +0.2
carbon source D-Glucosamine Hydrochloride (C) -0.1 -1.0 +0.2 +0.3 -2.1
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.0 +0.4 -0.5 -0.2 -2.3
stress Benzalkonium Chloride 0.004 mg/ml -0.5 +0.5 -0.1 -1.7 -0.7
balo Mixed culture, Halobacteriovorax-1 -0.3 +1.1 +0.1 -1.8 -1.0
phage Ste41 -0.2 +1.0 -0.7 -0.1 -1.7
stress LB Aerobic with Ramoplanin 0.000125 mM +0.5 -0.8 +0.7 -1.7 +0.4
control PBS_cage_1_mice _Feces_16 hr -0.7 -1.5 +0.6 +0.3 +0.6
predation 6 hr rep1_HD100_10fold_dilution_grewON +0.5 +1.3 -1.1 -0.3 -0.6
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM +0.2 -0.1 +0.0 +1.6 -1.8
control PBS_cage_1_mouse_1_Cecum_40 hr -0.2 -0.0 +0.3 +2.0 -1.7
stress Trimethoprim 0.005 mM -0.4 +0.1 +0.8 +1.3 -1.6
carbon source acetate (C) -0.2 -0.8 +2.2 +0.2 -0.4
control PBS_cage_2_mouse_2_Cecum_40 hr +0.3 +0.9 -0.2 -1.0 +1.1
M9 Acetate 0.5% aerobic -0.0 +0.0 +2.3 -1.1 -0.0
M9 Acetate 0.5% aerobic -0.1 +0.1 +2.3 -0.8 +0.2
carbon source acetate (C) -0.3 -0.5 +2.4 +0.2 +0.1
plasmid transformation mariner vector transformation; liquid outgrowth assay +0.2 -0.3 -0.1 +3.2 -0.7
stress Ciprofloxacin Hydrochloride 0.0024 mM +0.4 +0.8 +0.1 +0.8 +1.3
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