Fitness for 5 genes in Escherichia coli BW25113

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500 ntpps and ydiA are separated by 332 nucleotidesydiA and aroH are separated by 156 nucleotidesaroH and ydiE are separated by 131 nucleotidesydiE and ydiU are separated by 3 nucleotides b1702: pps - phosphoenolpyruvate synthase (NCBI), at 1,782,758 to 1,785,136 pps b1703: ydiA - hypothetical protein (NCBI), at 1,785,469 to 1,786,302 ydiA b1704: aroH - 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tryptophan repressible (NCBI), at 1,786,459 to 1,787,505 aroH b1705: ydiE - hypothetical protein (NCBI), at 1,787,637 to 1,787,828 ydiE b1706: ydiU - hypothetical protein (NCBI), at 1,787,832 to 1,789,268 ydiU
Group Condition b1702 b1703 b1704 b1705 b1706
pps ydiA aroH ydiE ydiU
carbon source acetate (C) -4.9 -0.7 -0.7 N.D. -0.2
carbon source pyruvate (C) -4.8 -0.5 -0.4 N.D. -0.0
carbon source pyruvate (C) -4.9 -0.5 -0.1 N.D. -0.2
carbon source D,L-Lactate (C) -4.7 -0.8 -0.2 N.D. +0.2
carbon source D-Serine (C) -4.2 -0.2 -1.0 N.D. +0.0
carbon source acetate (C) -4.0 -0.6 -0.6 N.D. -0.1
carbon source D,L-Lactate (C) -4.3 -0.4 -0.4 N.D. -0.1
carbon source D-Serine (C) -3.8 -0.4 -0.8 N.D. -0.0
carbon source Acetate (C) -4.2 -0.6 +0.0 N.D. -0.2
carbon source Acetate (C) -3.8 -0.5 -0.1 N.D. -0.1
M9 Acetate 0.5% aerobic -3.0 -0.9 +0.1 N.D. -0.2
carbon source D-Lactate (C) -2.9 -0.4 -0.3 N.D. +0.0
M9 Acetate 0.5% aerobic -2.7 -0.6 +0.0 N.D. -0.1
carbon source D-Lactate (C) -2.8 -0.2 -0.4 N.D. -0.0
carbon source casaminos (C) -0.2 -0.1 -2.6 N.D. -0.2
nitrogen source D-Serine (N) -2.8 -0.1 -0.4 N.D. +0.1
nitrogen source D-Serine (N) -2.5 +0.3 -0.6 N.D. -0.0
carbon source Ying_OrganicAcid7 rep A; time point 3 -2.4 +0.1 -0.2 N.D. -0.3
predation 6 hr rep1_HD100_10fold_dilution_grewON +0.5 -1.0 -0.8 N.D. -1.0
carbon source Ying_OrganicAcid7 rep B; time point 3 -2.3 +0.2 -0.0 N.D. -0.1
carbon source casaminos (C) -0.4 +0.0 -2.1 N.D. +0.1
carbon source carbon source D-Glucose 0.25mM -0.9 -0.1 -0.5 N.D. -0.7
carbon source Ying_OrganicAcid7 rep C; time point 3 -2.2 +0.4 -0.2 N.D. -0.3
carbon source Ying_OrganicAcid7 rep B; time point 2 -2.1 -0.0 +0.1 N.D. +0.0
carbon source Ying_OrganicAcid7 rep C; time point 2 -1.8 +0.1 +0.0 N.D. -0.2
carbon source Ying_OrganicAcid7 rep A; time point 2 -1.5 +0.2 -0.3 N.D. -0.2
stress Trimethoprim 0.005 mM -0.1 -1.1 -0.7 N.D. +0.2
phage RB68 -0.7 +0.7 +0.8 N.D. +0.2
phage RB68 -0.4 +0.5 +0.6 N.D. +0.9
phage Papa dilution 10-1 cacl2 maltose +0.3 +0.8 +0.4 N.D. +0.9
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