Fitness for 5 genes in Escherichia coli BW25113

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500 ntrprA and b1689 are separated by 137 nucleotidesb1689 and ydiM are separated by 99 nucleotidesydiM and ydiN are separated by 226 nucleotidesydiN and ydiB are separated by 11 nucleotides b4431: rprA - Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq), at 1,768,396 to 1,768,501 rprA b1689: b1689 - orf, hypothetical protein (VIMSS), at 1,768,639 to 1,768,995 b1689 b1690: ydiM - predicted transporter (NCBI), at 1,769,095 to 1,770,309 ydiM b1691: ydiN - predicted transporter (RefSeq), at 1,770,536 to 1,771,801 ydiN b1692: ydiB - quinate/shikimate 5-dehydrogenase, NAD(P)-binding (NCBI), at 1,771,813 to 1,772,679 ydiB
Group Condition b4431 b1689 b1690 b1691 b1692
rprA b1689 ydiM ydiN ydiB
phage Phage_N4_cage_3_mouse_4_Cecum_40 hr -6.2 -0.4 -0.6 -1.7 -1.1
carbon source carbon source D-Mannose 0.5mM -5.3 -1.5 -0.4 -0.3 -2.3
M9 Acetate 0.5% aerobic -0.9 -0.8 -1.9 -1.3 -0.5
M9 Acetate 0.5% aerobic -0.4 -0.7 -1.9 -1.4 -0.9
M9 Glucose 2% anaerobic -0.7 -0.7 -1.8 -1.2 -0.7
M9 Glucose 2%, 20 mM NO3- anaerobic -0.8 -0.6 -2.0 -1.1 -0.6
M9 Glucose 2% aerobic -0.6 -0.6 -1.9 -1.2 -0.7
carbon source carbon source D-Glucose 20mM -2.8 +0.2 -0.3 -0.5 -1.3
M9 Glucose 2% aerobic -0.4 -0.5 -2.0 -1.2 -0.6
stress LB Aerobic with Ramoplanin 0.000125 mM -0.4 -1.7 -0.4 -0.9 -1.0
carbon source carbon source D-Mannose 0.5mM -2.8 -0.4 -0.7 +0.0 -0.6
stress LB Anaerobic with Azlocillin 0.00003125 mM -3.1 -0.2 -0.5 -0.3 -0.4
phage Phage_N4_cage_3_mouse_1_Cecum_40 hr -0.7 -0.3 -1.5 -1.1 -0.8
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr -0.4 -1.0 -0.4 -1.8 -0.4
motility outer cut, LB soft agar motility assay -1.0 -0.9 -0.8 -0.5 -0.9
control PBS_cage_1_mouse_2_Cecum_40 hr +0.1 -2.2 +0.4 -1.8 -0.5
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM -3.4 -0.6 -0.4 +0.3 +0.2
balo Mixed culture, Halobacteriovorax-1 -1.8 -0.5 -0.5 -0.7 +0.6
plasmid transformation vcDART vector transformation; liquid outgrowth assay -3.0 -1.1 +1.1 +0.2 +0.1
control PBS_cage_1_mice _Feces_40 hr +0.5 -1.5 +1.2 -1.4 +0.3
control PBS_cage_1_mice _Feces_16 hr +0.2 -2.1 +1.5 -1.0 +0.5
control PBS_cage_1_mouse_1_Cecum_40 hr +0.7 -1.9 +0.3 -1.2 +1.2
control PBS_cage_1_mice _Feces_22 hr +0.5 -0.9 +1.2 -1.3 +0.5
phage Ste41 -0.8 -0.7 +1.3 +0.7 +0.6
phage N4_phage 0.09375 MOI TC1 -0.9 -0.5 +1.5 +0.9 +0.6
phage T7_phage 0.0015625 MOI TC2 -0.9 +1.0 +1.3 +0.6 +0.7
phage Ste41 +1.0 +0.1 +1.3 +0.9 +0.8
phage N4_phage 0.009375 MOI TC2 +0.6 +0.1 +2.3 +1.8 +0.5
phage Papa dilution 10-1 cacl2 maltose +0.2 +1.2 +2.2 +1.0 +0.8
stress Trimethoprim 0.005 mM +0.0 +0.2 +2.7 +2.1 +0.8
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