Fitness for 5 genes in Escherichia coli BW25113

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500 ntrsxA and rsxB overlap by 1 nucleotidesrsxB and rsxC overlap by 8 nucleotidesrsxC and rsxD are separated by 0 nucleotidesrsxD and rsxG are separated by 3 nucleotides b1627: rsxA - Na(+)-translocating NADH-quinone reductase subunit E (NCBI), at 1,703,791 to 1,704,372 rsxA b1628: rsxB - electron transport complex protein RnfB (NCBI), at 1,704,372 to 1,704,950 rsxB b1629: rsxC - electron transport complex protein RnfC (NCBI), at 1,704,943 to 1,707,165 rsxC b1630: rsxD - electron transport complex protein RnfD (NCBI), at 1,707,166 to 1,708,224 rsxD b1631: rsxG - electron transport complex protein RnfG (NCBI), at 1,708,228 to 1,708,848 rsxG
Group Condition b1627 b1628 b1629 b1630 b1631
rsxA rsxB rsxC rsxD rsxG
phage T7_phage 0.0015625 MOI TC1 -4.3 -2.8 -1.3 -1.8 N.D.
phage T7_phage 0.0015625 MOI TC2 -4.8 -3.0 -1.0 -1.1 N.D.
plasmid transformation vcDART vector transformation; liquid outgrowth assay -1.6 -3.6 -1.2 -3.3 N.D.
stress 2-nitrobenzenesulfonyl fluoride -2.8 -2.0 -1.1 -2.5 N.D.
plasmid transformation vcDART vector transformation; liquid outgrowth assay -1.2 -3.6 -2.0 -1.2 N.D.
phage T7_phage 0.00015625 MOI TC2 -2.7 -1.6 -1.4 -1.7 N.D.
protonated/deuterated deuterated glucose in D2O -2.3 -1.8 -1.5 -1.5 N.D.
stress LB Anaerobic with Nitrofurantoin 0.00003125 mM -2.8 -2.2 -0.6 -1.4 N.D.
phage T7_phage 0.00015625 MOI TC4 -1.7 -1.5 -1.2 -2.1 N.D.
phage Ste41 -2.6 -2.3 -0.5 -1.0 N.D.
control PBS_cage_1_mice _Feces_16 hr -1.9 -2.9 -0.9 -0.8 N.D.
protonated/deuterated protonated glucose in D2O -2.0 -1.4 -1.0 -1.8 N.D.
plasmid transformation mariner vector transformation; liquid outgrowth assay -1.7 -1.7 -1.1 -1.7 N.D.
protonated/deuterated protonated glucose in D2O -1.4 -1.8 -1.0 -1.9 N.D.
control PBS_cage_1_mouse_2_Cecum_40 hr -1.6 -2.6 -0.5 -1.2 N.D.
protonated/deuterated deuterated glucose in D2O -1.3 -1.8 -0.9 -1.8 N.D.
carbon source Glycolic Acid (C) -1.9 -1.3 -0.5 -2.2 N.D.
stress LB Anaerobic with Phenazine ethosulfate 0.000125 mM +1.7 +1.5 +1.1 +1.4 N.D.
stress undecene 5 vol% +1.6 +1.7 +1.2 +1.5 N.D.
stress Trimethoprim 0.00125 mM +1.4 +1.7 +1.5 +2.1 N.D.
stress Trimethoprim 0.0025 mM +1.4 +1.7 +1.8 +1.9 N.D.
stress Doxycycline hyclate 0.001 mg/ml +2.1 +1.7 +1.3 +1.7 N.D.
stress LB Anaerobic with Phenazine ethosulfate 0.000125 mM +2.1 +1.5 +1.5 +2.0 N.D.
stress Chloramphenicol 0.001 mg/ml +1.7 +2.4 +1.4 +1.6 N.D.
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM +1.9 +1.9 +1.5 +1.8 N.D.
stress Trimethoprim 0.005 mM +3.0 +1.3 +1.3 +2.1 N.D.
stress Chloramphenicol 0.0025 mg/ml +2.1 +2.9 +1.8 +2.1 N.D.
stress Tetracycline 0.0008 mg/ml +2.4 +2.5 +1.8 +2.4 N.D.
stress octanol 0.08 vol% +2.5 +3.2 +2.4 +2.0 N.D.
stress Benzalkonium Chloride 0.004 mg/ml +3.4 +4.6 +3.2 +3.8 N.D.
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