Fitness for 5 genes in Escherichia coli BW25113

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 1179 experiments or choose conditions or try the comparative fitness browser

500 ntfolM and ydgC overlap by 4 nucleotidesydgC and rstA are separated by 128 nucleotidesrstA and rstB are separated by 3 nucleotidesrstB and tus are separated by 75 nucleotides b1606: folM - short chain dehydrogenase (NCBI), at 1,679,000 to 1,679,722 folM b1607: ydgC - conserved inner membrane protein associated with alginate biosynthesis (NCBI), at 1,679,719 to 1,680,054 ydgC b1608: rstA - DNA-binding response regulator in two-component regulatory system with RstB (RefSeq), at 1,680,183 to 1,680,902 rstA b1609: rstB - sensory histidine kinase in two-component regulatory system with RstA (NCBI), at 1,680,906 to 1,682,207 rstB b1610: tus - DNA replication terminus site-binding protein (NCBI), at 1,682,283 to 1,683,212 tus
Group Condition b1606 b1607 b1608 b1609 b1610
folM ydgC rstA rstB tus
predation 6 hr rep1_HD100_10fold_dilution_grewON +0.6 -4.2 +0.7 -1.8 -0.0
phage T7_phage 0.00015625 MOI TC4 -0.5 -3.7 +0.8 -0.5 -0.9
phage T7_phage 0.0015625 MOI TC2 +0.3 -2.7 -2.1 +0.4 -0.5
carbon source carbon source D-Mannose 5mM +0.9 -4.7 +0.4 -1.0 +0.1
phage TP4 -0.1 -4.5 -0.1 +0.4 +0.0
stress LB Anaerobic with Amoxicillin 0.0000078125 mM -0.4 -2.5 -0.1 -0.7 -0.4
stress LB Anaerobic with Doxycycline hyclate 0.00000078125 mM -0.2 -3.3 +0.1 -0.4 -0.0
control PBS_cage_2_mouse_1_Cecum_40 hr -0.2 -1.4 -0.9 -0.4 -0.6
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM -0.1 -1.0 -0.7 -1.1 -0.7
stress Ciprofloxacin Hydrochloride 0.0003 mM -0.2 -2.9 +0.2 -0.9 +0.2
control PBS_cage_1_mouse_1_Cecum_40 hr -0.3 -1.7 -1.1 -0.2 -0.2
phage N4_phage 0.00009375 MOI TC5 -0.1 -2.1 -0.2 -0.9 -0.2
stress LB Anaerobic with Nitrofurantoin 0.00003125 mM +0.2 -1.9 -0.6 +0.6 -1.1
stress LB Anaerobic with Chlorhexidine diacetate salt 0.000000625 mM -0.0 -2.5 -0.3 +0.2 -0.2
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM +0.4 -2.7 +0.4 -0.7 -0.2
phage RB68 -0.2 -1.7 +0.1 +0.4 -1.2
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM -0.4 -1.9 -1.1 +0.9 +0.2
stress LB Anaerobic with Trimethoprim 0.0000003125 mM +0.8 -1.7 -0.4 -0.4 +0.1
stress LB Anaerobic with Ciprofloxacin Hydrochloride 0.0000000390625 mM +0.2 -1.5 +0.4 -0.8 +0.7
phage T7_phage 0.00015625 MOI TC3 +0.1 +1.2 -1.1 -0.5 -0.5
stress LB Aerobic with Nitrofurantoin 0.00003125 mM +0.3 -1.6 +0.3 +0.9 +0.2
stress Trimethoprim 0.005 mM +1.5 -0.7 +1.2 -1.0 +0.2
phage N4_phage 0.009375 MOI TC2 -0.3 +1.1 -0.9 +1.0 +0.2
plasmid transformation mariner vector transformation; liquid outgrowth assay +0.2 +1.6 +0.4 -1.2 +0.2
stress M9 with Methotrexate 1.98 mM 24 hr +2.9 +0.0 -0.3 -0.9 -0.2
phage N4_phage 0.09375 MOI TC1 +0.1 +2.1 -0.4 +0.4 -0.5
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM +0.2 +0.5 +1.4 +1.1 -0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM +0.1 +1.2 +1.2 +1.0 +0.1
phage N4_phage 0.0009375 MOI TC3 +0.6 +2.6 +0.6 +0.4 -0.0
carbon source carbon source D-Glucose 0.25mM +0.3 +2.6 -0.0 +1.1 +0.3
remove
b1606
plot
remove
b1607
plot
remove
b1608
remove
b1609
plot
remove
b1610
plot