Fitness for 5 genes in Escherichia coli BW25113

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500 ntpntB and pntA are separated by 10 nucleotidespntA and ydgH are separated by 523 nucleotidesydgH and ydgI are separated by 185 nucleotidesydgI and folM are separated by 36 nucleotides b1602: pntB - pyridine nucleotide transhydrogenase (NCBI), at 1,672,996 to 1,674,384 pntB b1603: pntA - NAD(P) transhydrogenase subunit alpha (NCBI), at 1,674,395 to 1,675,927 pntA b1604: ydgH - hypothetical protein (NCBI), at 1,676,451 to 1,677,395 ydgH b1605: ydgI - predicted arginine/ornithine antiporter transporter (NCBI), at 1,677,581 to 1,678,963 ydgI b1606: folM - short chain dehydrogenase (NCBI), at 1,679,000 to 1,679,722 folM
Group Condition b1602 b1603 b1604 b1605 b1606
pntB pntA ydgH ydgI folM
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM -0.9 +0.2 -4.2 -2.4 -0.1
stress octanol 0.08 vol% +0.5 +0.4 -6.0 -0.8 +0.3
stress undecene 5 vol% -0.0 -0.5 -4.7 -0.2 -0.1
stress undecene 5 vol% -0.0 +0.0 -4.5 -0.6 -0.0
stress Benzalkonium Chloride 0.004 mg/ml -0.3 +0.1 -4.5 -0.4 +0.4
stress undecene 2.5 vol% -0.0 -0.3 -3.7 -0.2 +0.1
stress undecene 2.5 vol% -0.1 -0.5 -2.6 -0.1 +0.2
stress decyl alcohol 5 vol% -0.1 +0.1 -2.8 -0.2 -0.1
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM +0.1 +0.1 -2.3 -0.4 -0.4
nitrogen source D-Serine (N) -1.5 -1.3 +0.1 -0.2 +0.1
phage T7_phage 0.00015625 MOI TC4 -0.1 +0.7 -2.7 -0.2 -0.5
stress LB Anaerobic with Benzethonium chloride 0.000015625 mM -0.1 -0.1 -2.6 -0.0 +0.1
stress Cisplatin 0.1 mg/ml -0.2 +0.2 -1.4 -1.1 -0.2
stress LB Anaerobic with Irgasan 0.000000625 mM +0.4 -0.1 -2.6 +0.2 +0.1
stress Trimethoprim 0.005 mM -0.2 -1.9 -1.0 -0.3 +1.5
stress LB Aerobic with Irgasan 0.0000003125 mM -0.5 +0.4 -1.6 +0.1 +0.5
stress Trimethoprim 0.0025 mM -0.2 -0.4 -0.8 -1.0 +1.4
stress Trimethoprim 0.00125 mM +0.1 +0.3 -1.2 -1.0 +1.1
carbon source carbon source D-Glucose 5mM +1.1 -1.6 -0.1 +0.1 +0.5
phage T7_phage 0.0015625 MOI TC1 +0.4 +1.2 -1.1 -0.1 -0.3
phage Ste41 -0.9 +0.4 +1.1 +0.5 -0.5
plasmid transformation vcDART vector transformation; liquid outgrowth assay +0.7 -0.2 -0.4 -0.5 +1.3
predation 6 hr rep1_HD100_10fold_dilution_grewON +0.3 -0.6 +1.1 -0.5 +0.6
carbon source carbon source D-Mannose 5mM +0.7 +0.3 +0.6 -1.1 +0.9
stress M9 with Methotrexate 1.98 mM 24 hr -0.1 -0.4 +0.7 -0.4 +1.7
stress LB Anaerobic with Cephalothin 0.0000078125 mM +0.0 -0.9 +3.7 -0.1 -0.7
stress Carbenicillin 0.008 mg/ml -0.0 -0.7 +2.6 -0.2 +0.4
stress LB Anaerobic with Cephalothin 0.0000078125 mM +0.0 -1.2 +4.4 -0.6 +0.0
stress M9 with Methotrexate 1.98 mM 24 hr -0.0 -0.1 +0.7 -0.2 +2.9
stress Cephalothin 0.01 mg/ml +0.4 +0.2 +5.8 -0.0 -0.1
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