Fitness for 5 genes in Escherichia coli BW25113

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500 ntmdtI and mdtJ overlap by 14 nucleotidesmdtJ and ydgG are separated by 411 nucleotidesydgG and pntB are separated by 24 nucleotidespntB and pntA are separated by 10 nucleotides b1599: mdtI - multidrug efflux system transporter (NCBI), at 1,670,844 to 1,671,173 mdtI b1600: mdtJ - multidrug efflux system transporter (NCBI), at 1,671,160 to 1,671,525 mdtJ b1601: ydgG - predicted inner membrane protein (NCBI), at 1,671,937 to 1,672,971 ydgG b1602: pntB - pyridine nucleotide transhydrogenase (NCBI), at 1,672,996 to 1,674,384 pntB b1603: pntA - NAD(P) transhydrogenase subunit alpha (NCBI), at 1,674,395 to 1,675,927 pntA
Group Condition b1599 b1600 b1601 b1602 b1603
mdtI mdtJ ydgG pntB pntA
carbon source carbon source D-Glucose 0.25mM N.D. -2.4 -0.1 -0.6 -0.7
control PBS_cage_1_mice _Feces_22 hr N.D. -3.8 -0.3 -0.0 +0.6
carbon source carbon source D-Mannose 5mM N.D. -4.0 +0.1 +0.4 +0.1
nitrogen source D-Serine (N) N.D. -0.3 +0.1 -1.5 -1.3
control PBS_cage_1_mouse_2_Cecum_40 hr N.D. -4.2 +0.4 +0.3 +0.4
mzaabcde mzaABCDE N.D. -2.6 +0.1 -0.1 -0.4
carbon source carbon source D-Glucose 1mM N.D. -2.3 -0.4 +0.0 -0.2
carbon source carbon source D-Glucose 20mM N.D. -3.3 +0.2 +0.2 +0.1
carbon source carbon source D-Glucose 0.25mM N.D. -2.0 -0.2 +0.4 -1.0
carbon source carbon source D-Mannose 0.5mM N.D. -3.4 +0.7 +0.0 +0.0
nitrogen source D-Serine (N) N.D. -0.3 +0.0 -1.2 -1.2
micoeukaryotes Tetrahymena sp., Mixed culture-1 N.D. -1.3 +0.3 -1.1 -0.3
control PBS_cage_1_mice _Feces_16 hr N.D. -3.4 +0.2 +0.1 +0.9
carbon source carbon source D-Mannose 20mM N.D. -2.1 +0.2 +0.4 -0.6
control NoBALOControl N.D. -1.4 -0.8 +0.3 -0.3
carbon source carbon source D-Mannose 1mM N.D. -1.8 +0.1 +0.7 -1.0
stress toluene 2.5 vol% N.D. +0.7 -1.9 -0.2 -0.4
control PBS_cage_2_mouse_1_Cecum_40 hr N.D. -2.3 -0.2 +0.5 +0.2
control PBS_cage_1_mice _Feces_40 hr N.D. -2.8 +0.2 +0.3 +0.8
attachment_assay_attached_sample Time0_Wash=PBS; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB N.D. -1.8 -0.3 +0.8 +0.2
carbon source carbon source D-Glucose 0.5mM N.D. -1.8 -0.2 +0.5 +0.5
carbon source carbon source D-Mannose 5mM N.D. -1.4 -0.5 +0.7 +0.3
carbon source carbon source D-Mannose 0.5mM N.D. -1.7 +0.3 +0.4 +0.3
stress octanol 0.08 vol% N.D. +0.4 -1.8 +0.5 +0.4
carbon source carbon source D-Glucose 5mM N.D. -0.0 +0.2 +1.1 -1.6
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr N.D. -0.5 +0.6 -0.7 +1.0
stress Trimethoprim 0.005 mM N.D. +1.4 +1.4 -0.2 -1.9
stress 3-methyl-1-butanol 1.25 vol% N.D. +0.2 +2.6 -1.0 -0.0
phage T7_phage 0.0015625 MOI TC2 N.D. +1.3 +0.4 -0.7 +1.0
stress 3-methyl-1-butanol 1.25 vol% N.D. -0.1 +3.2 -0.4 +0.5
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