Fitness for 5 genes in Escherichia coli BW25113

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500 ntydfE and insD are separated by 2 nucleotidesinsD and intQ are separated by 13 nucleotidesintQ and rspB are separated by 187 nucleotidesrspB and rspA are separated by 11 nucleotides b1577: ydfE - Qin prophage; predicted protein (RefSeq), at 1,648,102 to 1,648,866 ydfE b1578: insD - Qin prophage; IS2 insertion element transposase InsAB', C-ter fragment (pseudogene) (RefSeq), at 1,648,869 to 1,649,561 insD b1579: intQ - Qin prophage; predicted defective integrase (RefSeq), at 1,649,575 to 1,650,732 intQ b1580: rspB - predicted oxidoreductase, Zn-dependent and NAD(P)-binding (NCBI), at 1,650,920 to 1,651,939 rspB b1581: rspA - predicted dehydratase (NCBI), at 1,651,951 to 1,653,165 rspA
Group Condition b1577 b1578 b1579 b1580 b1581
ydfE insD intQ rspB rspA
carbon source carbon source D-Glucose 0.25mM -0.1 N.D. -2.0 -1.5 -0.4
carbon source carbon source D-Mannose 0.5mM -0.5 N.D. -2.3 -0.6 -0.2
M9 Acetate 0.5% aerobic -0.2 N.D. -2.5 -0.5 +0.4
M9 Glucose 2% aerobic -0.2 N.D. -2.1 -0.4 -0.0
M9 Glucose 2% aerobic -0.1 N.D. -2.1 -0.3 -0.1
carbon source carbon source D-Glucose 0.5mM -0.6 N.D. -1.1 -0.0 -0.8
predation 6 hr rep1_HD100_10fold_dilution_grewON +0.0 N.D. -0.8 -0.2 -1.4
M9 Glucose 2%, 20 mM NO3- anaerobic -0.2 N.D. -2.0 -0.3 +0.1
M9 Acetate 0.5% aerobic -0.2 N.D. -2.3 -0.3 +0.6
nophagecontrol R1_N4_T1_phage0 +0.0 N.D. -0.8 -0.8 -0.6
M9 Glucose 2% anaerobic -0.1 N.D. -1.9 -0.2 +0.2
M9 Glucose 2% anaerobic -0.0 N.D. -1.6 -0.3 +0.3
phage T7_phage 0.0015625 MOI TC2 -0.9 N.D. +0.5 -0.3 -0.8
carbon source carbon source D-Glucose 0.5mM -0.2 N.D. -1.6 +0.1 +0.4
phage N4_phage 0.00009375 MOI TC4 -0.1 N.D. -0.1 +0.7 -1.5
carbon source carbon source D-Mannose 1mM -0.1 N.D. -1.5 +0.4 +0.3
stress LB Anaerobic with Ramoplanin 0.0000625 mM +0.2 N.D. -1.0 -0.6 +0.7
phage R2_N4_T2_phage10 +0.6 N.D. -0.8 +0.3 -0.7
carbon source carbon source D-Glucose 0.25mM -0.8 N.D. -1.0 +0.5 +0.9
stress LB Aerobic with Spiramycin 0.000125 mM +0.3 N.D. -1.0 -0.4 +0.6
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr -0.1 N.D. -0.8 -0.4 +1.0
stress LB Aerobic with Trimethoprim 0.00000125 mM +0.5 N.D. -0.6 -0.5 +0.6
control PBS_cage_1_mouse_1_Cecum_40 hr +0.5 N.D. -0.7 -0.9 +1.2
stress Ciprofloxacin Hydrochloride 0.0024 mM +0.4 N.D. -0.9 -0.2 +0.8
carbon source carbon source D-Mannose 5mM -0.1 N.D. -0.5 -0.4 +1.2
stress LB Anaerobic with Ampicillin 0.00000195313 mM +0.3 N.D. -0.2 -0.7 +1.0
stress Trimethoprim 0.005 mM +0.5 N.D. +1.9 +0.4 -2.0
phage Δdbn_10 +0.6 N.D. +1.1 -0.3 -0.4
phage Papa dilution 10-1 cacl2 maltose -0.0 N.D. +1.4 -0.4 +0.6
phage N4_phage 0.009375 MOI TC2 +0.3 N.D. +1.7 -0.0 +0.4
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