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Protein
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Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
ynbE and ydbL are separated by 7 nucleotides
ydbL and feaR are separated by 171 nucleotides
feaR and feaB are separated by 235 nucleotides
feaB and tynA are separated by 57 nucleotides
b1382: ynbE - predicted lipoprotein (NCBI), at 1,443,711 to 1,443,896
ynbE
b1383: ydbL - orf, hypothetical protein (VIMSS), at 1,443,904 to 1,444,230
ydbL
b1384: feaR - DNA-binding transcriptional dual regulator (NCBI), at 1,444,402 to 1,445,307
feaR
b1385: feaB - phenylacetaldehyde dehydrogenase (VIMSS), at 1,445,543 to 1,447,042
feaB
b1386: tynA - tyramine oxidase, copper-requiring (NCBI), at 1,447,100 to 1,449,373
tynA
Group
Condition
b1382
b1383
b1384
b1385
b1386
ynbE
ydbL
feaR
feaB
tynA
phage
Ste41
-4.2
-0.0
-0.3
-0.4
-0.6
plasmid transformation
vcDART vector transformation; liquid outgrowth assay
-4.6
-0.4
+0.0
-0.2
-0.0
phage
Δdbn_10
-2.4
-0.2
+0.2
-0.8
-0.5
stress
2-Furfuraldehyde 0.25 vol%
-3.0
-0.1
-0.0
+0.1
-0.2
control
PBS_cage_1_mice _Feces_16 hr
-3.8
+0.3
+0.5
+0.0
-0.2
phage
Ste41
-1.8
-0.2
+0.4
-1.1
-0.4
stress
Chloramphenicol 0.005 mg/ml
-1.2
-1.5
+0.1
-0.1
-0.0
phage
RB68
-0.6
-0.9
-0.6
-0.3
-0.4
stress
LB Anaerobic with Nitrofurantoin 0.00003125 mM
-2.1
-0.2
+0.1
-0.6
+0.0
bacterial adhesion
1/10ON stiff
-2.3
+0.1
-0.1
-0.1
-0.2
predation
6 hr rep1_HD100_10fold_dilution_grewON
-1.6
-0.9
-0.4
+0.2
+0.1
stress
Trimethoprim 0.005 mM
-0.7
+0.5
-1.3
-0.0
-1.0
control
PBS_cage_1_mice _Feces_40 hr
-2.3
-0.4
+0.2
+0.4
-0.4
stress
LB Anaerobic with Ciprofloxacin Hydrochloride 0.0000000390625 mM
+0.2
-2.6
-0.2
+0.2
-0.0
stress
LB Anaerobic with 2-Mercaptopyridine N-oxide 0.000015625 mM
-1.2
-1.0
+0.2
-0.1
-0.1
stress
3-methyl-1-butanol 1.25 vol%
-0.9
-1.2
+0.2
-0.6
+0.4
stress
Cisplatin 0.1 mg/ml
-1.9
-0.0
+1.0
+0.2
-0.6
vitamin
M9 with Pyridoxine HCl 100 nM and 4-Deoxypyridoxine 0.25 uM
-1.9
+0.6
-0.1
+0.1
+0.0
vitamin
M9 with Pyridoxine HCl 100 nM and 4-Deoxypyridoxine 0.25 uM
-1.9
+0.4
-0.1
+0.3
+0.1
stress
LB Aerobic with Zinc Pyrithione 0.0000025 mM
-1.8
+0.7
+0.3
+0.1
+0.1
plasmid transformation
mariner vector transformation; liquid outgrowth assay
-0.9
+1.2
-0.2
-0.1
-0.4
control
PBS_cage_1_mice _Feces_22 hr
-1.3
+0.7
+0.5
+0.1
-0.3
phage
N4_phage 0.00009375 MOI TC1
+1.0
-1.4
-0.2
+0.4
+0.2
carbon source
Dodecanol and Rhamnolipid (C)
+1.3
-0.8
+0.1
-0.3
-0.1
stress
LB Aerobic with Novobiocin 0.0000625 mM
-1.4
+0.9
+0.4
+0.2
+0.3
stress
LB Aerobic with Benzethonium chloride 0.000015625 mM
-1.1
+1.1
-0.1
+0.4
+0.3
stress
LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM
-0.8
+1.3
+0.7
+0.5
+0.0
stress
LB Aerobic with Novobiocin 0.0000625 mM
-0.4
+0.8
+0.7
+0.3
+0.5
plasmid transformation
vcDART vector transformation; liquid outgrowth assay
+1.1
+0.0
+0.7
+0.4
+0.4
motility
outer cut, LB soft agar motility assay
+3.3
-0.6
+0.3
+0.2
+0.3
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