Fitness for 5 genes in Escherichia coli BW25113

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500 ntynbE and ydbL are separated by 7 nucleotidesydbL and feaR are separated by 171 nucleotidesfeaR and feaB are separated by 235 nucleotidesfeaB and tynA are separated by 57 nucleotides b1382: ynbE - predicted lipoprotein (NCBI), at 1,443,711 to 1,443,896 ynbE b1383: ydbL - orf, hypothetical protein (VIMSS), at 1,443,904 to 1,444,230 ydbL b1384: feaR - DNA-binding transcriptional dual regulator (NCBI), at 1,444,402 to 1,445,307 feaR b1385: feaB - phenylacetaldehyde dehydrogenase (VIMSS), at 1,445,543 to 1,447,042 feaB b1386: tynA - tyramine oxidase, copper-requiring (NCBI), at 1,447,100 to 1,449,373 tynA
Group Condition b1382 b1383 b1384 b1385 b1386
ynbE ydbL feaR feaB tynA
phage Ste41 -4.2 -0.0 -0.3 -0.4 -0.6
plasmid transformation vcDART vector transformation; liquid outgrowth assay -4.6 -0.4 +0.0 -0.2 -0.0
phage Δdbn_10 -2.4 -0.2 +0.2 -0.8 -0.5
stress 2-Furfuraldehyde 0.25 vol% -3.0 -0.1 -0.0 +0.1 -0.2
control PBS_cage_1_mice _Feces_16 hr -3.8 +0.3 +0.5 +0.0 -0.2
phage Ste41 -1.8 -0.2 +0.4 -1.1 -0.4
stress Chloramphenicol 0.005 mg/ml -1.2 -1.5 +0.1 -0.1 -0.0
phage RB68 -0.6 -0.9 -0.6 -0.3 -0.4
stress LB Anaerobic with Nitrofurantoin 0.00003125 mM -2.1 -0.2 +0.1 -0.6 +0.0
bacterial adhesion 1/10ON stiff -2.3 +0.1 -0.1 -0.1 -0.2
predation 6 hr rep1_HD100_10fold_dilution_grewON -1.6 -0.9 -0.4 +0.2 +0.1
stress Trimethoprim 0.005 mM -0.7 +0.5 -1.3 -0.0 -1.0
control PBS_cage_1_mice _Feces_40 hr -2.3 -0.4 +0.2 +0.4 -0.4
stress LB Anaerobic with Ciprofloxacin Hydrochloride 0.0000000390625 mM +0.2 -2.6 -0.2 +0.2 -0.0
stress LB Anaerobic with 2-Mercaptopyridine N-oxide 0.000015625 mM -1.2 -1.0 +0.2 -0.1 -0.1
stress 3-methyl-1-butanol 1.25 vol% -0.9 -1.2 +0.2 -0.6 +0.4
stress Cisplatin 0.1 mg/ml -1.9 -0.0 +1.0 +0.2 -0.6
vitamin M9 with Pyridoxine HCl 100 nM and 4-Deoxypyridoxine 0.25 uM -1.9 +0.6 -0.1 +0.1 +0.0
vitamin M9 with Pyridoxine HCl 100 nM and 4-Deoxypyridoxine 0.25 uM -1.9 +0.4 -0.1 +0.3 +0.1
stress LB Aerobic with Zinc Pyrithione 0.0000025 mM -1.8 +0.7 +0.3 +0.1 +0.1
plasmid transformation mariner vector transformation; liquid outgrowth assay -0.9 +1.2 -0.2 -0.1 -0.4
control PBS_cage_1_mice _Feces_22 hr -1.3 +0.7 +0.5 +0.1 -0.3
phage N4_phage 0.00009375 MOI TC1 +1.0 -1.4 -0.2 +0.4 +0.2
carbon source Dodecanol and Rhamnolipid (C) +1.3 -0.8 +0.1 -0.3 -0.1
stress LB Aerobic with Novobiocin 0.0000625 mM -1.4 +0.9 +0.4 +0.2 +0.3
stress LB Aerobic with Benzethonium chloride 0.000015625 mM -1.1 +1.1 -0.1 +0.4 +0.3
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM -0.8 +1.3 +0.7 +0.5 +0.0
stress LB Aerobic with Novobiocin 0.0000625 mM -0.4 +0.8 +0.7 +0.3 +0.5
plasmid transformation vcDART vector transformation; liquid outgrowth assay +1.1 +0.0 +0.7 +0.4 +0.4
motility outer cut, LB soft agar motility assay +3.3 -0.6 +0.3 +0.2 +0.3
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