Fitness for 5 genes in Escherichia coli BW25113

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500 ntsapC and sapB overlap by 14 nucleotidessapB and sapA overlap by 4 nucleotidessapA and ymjA are separated by 312 nucleotidesymjA and ycjJ are separated by 133 nucleotides b1292: sapC - predicted antimicrobial peptide transporter subunit (NCBI), at 1,351,652 to 1,352,542 sapC b1293: sapB - predicted antimicrobial peptide transporter subunit (NCBI), at 1,352,529 to 1,353,494 sapB b1294: sapA - predicted antimicrobial peptide transporter subunit (NCBI), at 1,353,491 to 1,355,134 sapA b1295: ymjA - hypothetical protein (NCBI), at 1,355,447 to 1,355,692 ymjA b1296: ycjJ - putative amino acid/amine transport protein (VIMSS), at 1,355,826 to 1,357,211 ycjJ
Group Condition b1292 b1293 b1294 b1295 b1296
sapC sapB sapA ymjA ycjJ
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr -2.3 -6.5 -0.7 -0.2 -0.3
dart Outgrowth from conjugation with pRH22 in LB+Gent50+Kan100 -5.5 -3.8 -0.3 +0.1 -0.2
phage Phage_N4_cage_4_mouse_1_Cecum_40 hr -4.1 -5.5 -0.4 +0.0 +0.6
dart Outgrowth from conjugation with pRH23 in LB+Gent50 -4.6 -3.4 -0.2 -0.4 -0.2
dart Outgrowth from conjugation with pRH22 in LB+Gent50+Kan100 -3.8 -4.0 -0.4 -0.2 -0.3
nitrogen source Putrescine (N) -2.5 +0.0 +0.3 -1.4 -4.7
dart Outgrowth from conjugation with pRH22 in LB+Gent50 -2.8 -4.7 -0.4 -0.0 -0.2
dart Outgrowth from conjugation with pRH23 in LB+Gent50+Kan100 -4.4 -3.0 -0.4 -0.2 +0.1
carbon source a-Ketoglutaric (C) -3.5 -4.3 +0.2 -0.4 +0.5
carbon source L-Fucose (C) -3.2 -3.3 -0.0 -0.3 -0.0
stress octanol 0.08 vol% -1.8 -2.7 -0.9 -1.8 +0.4
phage P2 dilution 10-3 -1.5 -4.3 -0.5 -0.6 +0.1
phage Δdbn_10 -2.8 -3.4 -0.4 +0.3 -0.3
TN_15CS_15C_10dbl_rep1 -2.4 -4.0 -0.3 +0.3 +0.0
carbon source L-Malic (C) -4.0 -2.4 -0.0 -0.3 +0.5
carbon source Ying_Nucleobase14 rep C; time point 2 -3.6 -3.5 +0.9 +0.2 -0.3
TN_18CS_18C_10dbl_rep1 -3.1 -3.4 +0.1 +0.2 +0.3
stress Spectinomycin 0.00625 mg/ml -3.4 -3.1 +0.3 -0.0 +0.6
nitrogen source Putrescine (N) -2.2 +0.4 +0.7 -0.1 -4.1
carbon source Glycolic Acid (C) -4.3 -1.8 +0.7 +0.3 +0.0
carbon source carbon source D-Mannose 0.5mM -1.4 -4.3 +0.4 +0.6 +0.2
stress Benzalkonium Chloride 0.004 mg/ml -2.2 -2.1 -1.0 -0.5 +1.6
stress Spectinomycin 0.0125 mg/ml -2.3 -2.6 +0.7 -1.0 +1.3
carbon source Ying_Nucleobase14 rep B; time point 3 -4.2 -1.6 +1.3 +0.6 -0.1
stress LB Aerobic with Ramoplanin 0.000125 mM -2.1 -3.0 -0.6 +1.2 +1.0
stress Trimethoprim 0.005 mM +2.2 +2.1 +1.7 -0.2 -1.0
stress Nalidixic 0.06 mM +3.1 +2.4 +1.2 -0.6 +0.1
stress Cephalothin 0.01 mg/ml +3.2 +2.6 +0.6 -0.3 +0.8
stress 2-Furfuraldehyde 0.25 vol% +3.8 +3.9 +1.8 +0.2 +0.8
stress Nalidixic 0.006 mg/ml +5.7 +4.7 +1.6 -0.2 +0.2
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